3G2V

VHS Domain of human GGA1 complexed with Sotilin C-terminal Phosphopeptide

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3g2va_	All alpha proteins	alpha-alpha superhelix	ENTH/VHS domain	VHS domain	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C [auth B]	d3g2vb_	All alpha proteins	alpha-alpha superhelix	ENTH/VHS domain	VHS domain	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	ENTH/VHS domain-like	8041836	3000164	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	ENTH/VHS domain-like	8041836	3000164	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	VHS	e3g2vA1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: VHS	ECOD (1.6)
C [auth B]	VHS	e3g2vB1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: VHS	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.25.40.90	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
C [auth B]	1.25.40.90	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C [auth B]	PF00790	VHS domain (VHS)	VHS domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C [auth B]	ADP-ribosylation factor-binding protein GGA1	binding phospholipid binding lipid binding phosphatidylinositol binding small GTPase binding protein binding enzyme binding GTPase binding ubiquitin binding ubiquitin-like protein binding	protein localization Golgi to plasma membrane transport establishment of protein localization cellular localization nitrogen compound transport post-Golgi vesicle-mediated transport transport establishment of protein localization to plasma membrane Golgi to plasma membrane protein transport vesicle-mediated transport localization cellular macromolecule localization protein localization to cell periphery establishment of protein localization to membrane protein localization Golgi to plasma membrane transport establishment of protein localization cellular localization nitrogen compound transport post-Golgi vesicle-mediated transport transport establishment of protein localization to plasma membrane Golgi to plasma membrane protein transport vesicle-mediated transport localization cellular macromolecule localization protein localization to cell periphery establishment of protein localization to membrane protein localization to plasma membrane organic substance transport localization within membrane protein localization to membrane establishment of localization vesicle-mediated transport to the plasma membrane protein transport macromolecule localization cellular process Golgi vesicle transport protein localization to cell surface organonitrogen compound catabolic process organonitrogen compound metabolic process catabolic process primary metabolic process protein catabolic process macromolecule catabolic process organic substance metabolic process metabolic process protein metabolic process macromolecule metabolic process organic substance catabolic process positive regulation of protein metabolic process positive regulation of biological process regulation of primary metabolic process positive regulation of metabolic process positive regulation of macromolecule metabolic process regulation of biological process regulation of protein metabolic process biological regulation regulation of macromolecule metabolic process regulation of catabolic process positive regulation of protein catabolic process positive regulation of catabolic process regulation of metabolic process regulation of protein catabolic process intracellular transport establishment of localization in cell intracellular protein transport endosomal transport cytosolic transport retrograde transport, endosome to Golgi protein localization to cilium protein localization to ciliary membrane protein localization to organelle	membrane cellular anatomical entity intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle organelle intracellular membrane-bounded organelle nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen membrane cellular anatomical entity intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle organelle intracellular membrane-bounded organelle nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen protein-containing complex early endosome endosome intracellular vesicle endomembrane system cytoplasmic vesicle vesicle Golgi apparatus subcompartment Golgi apparatus organelle subcompartment trans-Golgi network endosome membrane early endosome membrane cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane organelle membrane
B [auth C], D	C-terminal fragment of Sortilin	molecular transducer activity neurotensin receptor activity, non-G protein-coupled transmembrane signaling receptor activity signaling receptor activity protein-containing complex binding binding retromer complex binding neurotrophin binding protein binding nerve growth factor binding growth factor binding enzyme binding nerve growth factor receptor activity neurotrophin receptor activity	cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation cell communication G protein-coupled receptor signaling pathway cellular process signal transduction neuropeptide signaling pathway developmental process fat cell differentiation regulation of developmental process cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation cell communication G protein-coupled receptor signaling pathway cellular process signal transduction neuropeptide signaling pathway developmental process fat cell differentiation regulation of developmental process cellular developmental process negative regulation of developmental process negative regulation of biological process regulation of cell differentiation negative regulation of fat cell differentiation cell differentiation negative regulation of cellular process negative regulation of cell differentiation regulation of fat cell differentiation cellular localization transport endosome to lysosome transport intracellular transport lysosomal transport establishment of localization vesicle-mediated transport localization establishment of localization in cell vacuolar transport plasma membrane to endosome transport import into cell endocytosis regulation of biosynthetic process cellular biosynthetic process cellular metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of gene expression organic substance metabolic process biosynthetic process organic substance biosynthetic process regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process endosomal transport multivesicular body sorting pathway endosome transport via multivesicular body sorting pathway maintenance of synapse structure cellular component organization cell junction maintenance cell junction organization cellular component maintenance synapse organization cellular component organization or biogenesis muscle structure development anatomical structure development striated muscle cell differentiation muscle cell differentiation myotube differentiation extrinsic apoptotic signaling pathway via death domain receptors cell surface receptor signaling pathway cell death extrinsic apoptotic signaling pathway apoptotic signaling pathway apoptotic process programmed cell death post-Golgi vesicle-mediated transport Golgi to vacuole transport cytosolic transport Golgi to lysosome transport Golgi vesicle transport response to organic substance response to hormone response to chemical response to endogenous stimulus response to organonitrogen compound response to peptide hormone response to insulin response to oxygen-containing compound response to nitrogen compound multicellular organismal process ossification vesicle organization organelle organization cellular response to growth factor stimulus neurotrophin TRK receptor signaling pathway cell surface receptor protein tyrosine kinase signaling pathway cellular response to endogenous stimulus neurotrophin signaling pathway response to growth factor enzyme-linked receptor protein signaling pathway protein localization establishment of protein localization nitrogen compound transport protein targeting establishment of protein localization to vacuole protein targeting to lysosome cellular macromolecule localization protein targeting to vacuole organic substance transport protein localization to vacuole protein localization to lysosome establishment of protein localization to organelle protein transport protein localization to organelle macromolecule localization intracellular protein transport hexose transmembrane transport glucose import carbohydrate transport transmembrane transport glucose transmembrane transport monosaccharide transmembrane transport carbohydrate transmembrane transport Golgi to endosome transport negative regulation of hydrolase activity regulation of catalytic activity negative regulation of lipase activity negative regulation of molecular function negative regulation of catalytic activity regulation of lipoprotein lipase activity negative regulation of lipoprotein lipase activity regulation of molecular function regulation of hydrolase activity regulation of lipase activity	clathrin-coated pit membrane cellular anatomical entity endomembrane system membrane-bounded organelle intracellular anatomical structure nuclear membrane nucleus intracellular membrane-bounded organelle intracellular organelle organelle envelope organelle nuclear envelope organelle membrane clathrin-coated pit membrane cellular anatomical entity endomembrane system membrane-bounded organelle intracellular anatomical structure nuclear membrane nucleus intracellular membrane-bounded organelle intracellular organelle organelle envelope organelle nuclear envelope organelle membrane intracellular vesicle cytoplasmic vesicle clathrin-coated vesicle coated vesicle cytoplasm vesicle cell surface cytosol Golgi cisterna membrane Golgi apparatus subcompartment Golgi apparatus organelle subcompartment Golgi cisterna Golgi stack cell periphery plasma membrane lytic vacuole vacuole lysosome endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane early endosome endosome transport vesicle trans-Golgi network transport vesicle Golgi-associated vesicle vacuolar membrane lytic vacuole membrane bounding membrane of organelle lysosomal membrane perinuclear region of cytoplasm endosome membrane cytoplasmic vesicle membrane vesicle membrane cerebellar climbing fiber to Purkinje cell synapse neuron to neuron synapse synapse cell junction asymmetric synapse glutamatergic synapse excitatory synapse asymmetric, glutamatergic, excitatory synapse

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C [auth B]	IPR002014	VHS domain	Domain
A, C [auth B]	IPR008942	ENTH/VHS	Homologous Superfamily
A, C [auth B]	IPR041198	N-terminal extension of GAT domain	Domain
A, C [auth B]	IPR008153	Gamma-adaptin ear (GAE) domain	Domain
A, C [auth B]	IPR038425	GAT domain superfamily	Homologous Superfamily
A, C [auth B]	IPR013041	Clathrin adaptor, appendage, Ig-like subdomain superfamily	Homologous Superfamily
A, C [auth B]	IPR004152	GAT domain	Domain
A, C [auth B]	IPR008152	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	Domain
A, C [auth B]	IPR027422	ADP-ribosylation factor-binding protein GGA1-3	Family
B [auth C], D	IPR031777	Sortilin, C-terminal	Domain
B [auth C], D	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
B [auth C], D	IPR006581	VPS10	Domain
B [auth C], D	IPR031778	Sortilin, N-terminal	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, C [auth B]	Pharos: Q9UJY5	astrocytic tumor medulloblastoma ovarian cancer sarcoidosis malignant ependymoma oligodendroglioma primitive neuroectodermal tumor X-linked mixed deafness with perilymphatic gusher Malignant neoplasm of breast osteosarcoma psoriasis
B [auth C], D	Pharos: Q99523	cardiovascular disease coronary artery disease ovarian cancer tuberculosis abdominal aortic aneurysm cystic fibrosis glioblastoma lung cancer MALT lymphoma non-small cell lung carcinoma peripheral arterial disease astrocytic tumor Coronary Arteriosclerosis Down syndrome heart disease cardiovascular disease coronary artery disease ovarian cancer tuberculosis abdominal aortic aneurysm cystic fibrosis glioblastoma lung cancer MALT lymphoma non-small cell lung carcinoma peripheral arterial disease astrocytic tumor Coronary Arteriosclerosis Down syndrome heart disease malignant ependymoma medulloblastoma oligodendroglioma psoriasis atypical teratoid rhabdoid tumor esophageal adenocarcinoma large cell medulloblastoma malignant glioma myocardial infarction

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B [auth C], D	SEP	Parent Component: SER RESID: AA0037 PSI-MOD : O-phospho-L-serine MOD:00046

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.