3E5Y
Crystal structure of TrmH family RNA methyltransferase from Burkholderia pseudomallei
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3e5ya_ | Alpha and beta proteins (a/b) | alpha/beta knot | alpha/beta knot | automated matches | automated matches | (Burkholderia pseudomallei 305 ) [TaxId: 425067 ], | SCOPe (2.08) |
B | d3e5yb_ | Alpha and beta proteins (a/b) | alpha/beta knot | alpha/beta knot | automated matches | automated matches | (Burkholderia pseudomallei 305 ) [TaxId: 425067 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | SpoU-like RNA 2'-O ribose methyltransferase | 8081237 | 4002340 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | alpha/beta knot | 8081238 | 3001122 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | alpha/beta knot | 8081238 | 3001122 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | SpoU_methylase | e3e5yA1 | A: a/b three-layered sandwiches | X: alpha/beta knot (From Topology) | H: alpha/beta knot (From Topology) | T: alpha/beta knot | F: SpoU_methylase | ECOD (1.6) |
B | SpoU_methylase | e3e5yB1 | A: a/b three-layered sandwiches | X: alpha/beta knot (From Topology) | H: alpha/beta knot (From Topology) | T: alpha/beta knot | F: SpoU_methylase | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.1280.10 | Alpha Beta | 3-Layer(aba) Sandwich | Alpha/beta knot | SPOUT methyltransferase, trefoil knot domain | CATH (4.3.0) |
B | 3.40.1280.10 | Alpha Beta | 3-Layer(aba) Sandwich | Alpha/beta knot | SPOUT methyltransferase, trefoil knot domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00588 | SpoU rRNA Methylase family (SpoU_methylase) | SpoU rRNA Methylase family | - | Family |