3B07
Crystal structure of octameric pore form of gamma-hemolysin from Staphylococcus aureus
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
G [auth F] | SCOP2B Superfamily | Leukocidin-like | 8074056 | 3000256 | SCOP2B (2022-06-29) |
E [auth B] | SCOP2B Superfamily | Leukocidin-like | 8074056 | 3000256 | SCOP2B (2022-06-29) |
F [auth D] | SCOP2B Superfamily | Leukocidin-like | 8074056 | 3000256 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Leukocidin-like | 8074056 | 3000256 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF07968 | e3b07A1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Leukocidin-like (From Topology) | T: Leukocidin-like | F: PF07968 | ECOD (1.6) |
B [auth C] | PF07968 | e3b07C1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Leukocidin-like (From Topology) | T: Leukocidin-like | F: PF07968 | ECOD (1.6) |
C [auth E] | PF07968 | e3b07E1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Leukocidin-like (From Topology) | T: Leukocidin-like | F: PF07968 | ECOD (1.6) |
D [auth G] | PF07968 | e3b07G1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Leukocidin-like (From Topology) | T: Leukocidin-like | F: PF07968 | ECOD (1.6) |
G [auth F] | PF07968 | e3b07F1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Leukocidin-like (From Topology) | T: Leukocidin-like | F: PF07968 | ECOD (1.6) |
E [auth B] | PF07968 | e3b07B1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Leukocidin-like (From Topology) | T: Leukocidin-like | F: PF07968 | ECOD (1.6) |
F [auth D] | PF07968 | e3b07D1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Leukocidin-like (From Topology) | T: Leukocidin-like | F: PF07968 | ECOD (1.6) |
H | PF07968 | e3b07H1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Leukocidin-like (From Topology) | T: Leukocidin-like | F: PF07968 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.70.240.10 | Mainly Beta | Distorted Sandwich | Leukocidin-like | Leukocidin/porin MspA | CATH (4.3.0) |
B [auth C] | 2.70.240.10 | Mainly Beta | Distorted Sandwich | Leukocidin-like | Leukocidin/porin MspA | CATH (4.3.0) |
C [auth E] | 2.70.240.10 | Mainly Beta | Distorted Sandwich | Leukocidin-like | Leukocidin/porin MspA | CATH (4.3.0) |
D [auth G] | 2.70.240.10 | Mainly Beta | Distorted Sandwich | Leukocidin-like | Leukocidin/porin MspA | CATH (4.3.0) |
G [auth F] | 2.70.240.10 | Mainly Beta | Distorted Sandwich | Leukocidin-like | Leukocidin/porin MspA | CATH (4.3.0) |
E [auth B] | 2.70.240.10 | Mainly Beta | Distorted Sandwich | Leukocidin-like | Leukocidin/porin MspA | CATH (4.3.0) |
F [auth D] | 2.70.240.10 | Mainly Beta | Distorted Sandwich | Leukocidin-like | Leukocidin/porin MspA | CATH (4.3.0) |
H | 2.70.240.10 | Mainly Beta | Distorted Sandwich | Leukocidin-like | Leukocidin/porin MspA | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth C], C [auth E], D [auth G] | PF07968 | Leukocidin/Hemolysin toxin family (Leukocidin) | Leukocidin/Hemolysin toxin family | - | Domain |
E [auth B], F [auth D], G [auth F], H | PF07968 | Leukocidin/Hemolysin toxin family (Leukocidin) | Leukocidin/Hemolysin toxin family | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A, B [auth C], C [auth E], D [auth G] | Gamma-hemolysin component B | - | ||
E [auth B], F [auth D], G [auth F], H | Gamma-hemolysin component A |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B [auth C], C [auth E], D [auth G] | IPR016183 | Leukocidin/Hemolysin toxin | Domain |
A, B [auth C], C [auth E], D [auth G] | IPR036435 | Leukocidin/porin MspA superfamily | Homologous Superfamily |
A, B [auth C], C [auth E], D [auth G] | IPR003963 | Bi-component toxin, staphylococci | Family |
E [auth B], F [auth D], G [auth F], H | IPR016183 | Leukocidin/Hemolysin toxin | Domain |
E [auth B], F [auth D], G [auth F], H | IPR036435 | Leukocidin/porin MspA superfamily | Homologous Superfamily |
E [auth B], F [auth D], G [auth F], H | IPR003963 | Bi-component toxin, staphylococci | Family |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Beta-barrel transmembrane | Pore-forming beta-sheet toxins | Aerolysin (n=14,S=14 or n=16,S=16) |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |