2YQD
Solution structure of the fifth bromodomain from mouse polybromo-1
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2yqda1 | All alpha proteins | Bromodomain-like | Bromodomain | automated matches | automated matches | house mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
A | d2yqda2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | house mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.920.10 | Mainly Alpha | Up-down Bundle | Histone Acetyltransferase | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00439 | Bromodomain (Bromodomain) | Bromodomain | Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine [3]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR037968 | Protein polybromo-1, Bromodomain 5 | Domain | |
IPR001487 | Bromodomain | Domain | |
IPR001025 | Bromo adjacent homology (BAH) domain | Domain | |
IPR043151 | Bromo adjacent homology (BAH) domain superfamily | Homologous Superfamily | |
IPR036427 | Bromodomain-like superfamily | Homologous Superfamily | |
IPR037382 | Remodelling complex subunit Rsc/polybromo | Family | |
IPR009071 | High mobility group box domain | Domain | |
IPR036910 | High mobility group box domain superfamily | Homologous Superfamily |