2OX6

Crystal structure of gene product SO3848 from Shewanella oneidensis MR-1

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2ox6a1	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	YdiL-like	Hypothetical protein SO3848	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
D	d2ox6d_	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	YdiL-like	Hypothetical protein SO3848	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
B	d2ox6b_	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	YdiL-like	Hypothetical protein SO3848	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
C	d2ox6c_	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	YdiL-like	Hypothetical protein SO3848	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	YdiL-like	8022845	4002426	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	lambda C1 repressor DNA-binding domain-like	8035225	3000119	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8035225	3000119	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8035225	3000119	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8035225	3000119	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DUF4447	e2ox6A1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: DUF4447	ECOD (1.6)
D	DUF4447	e2ox6D1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: DUF4447	ECOD (1.6)
B	DUF4447	e2ox6B1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: DUF4447	ECOD (1.6)
C	DUF4447	e2ox6C1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: DUF4447	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.3100.10	Mainly Alpha	Orthogonal Bundle	Putative cytoplasmic protein	Putative cytoplasmic protein	CATH (4.3.0)
D	1.10.3100.10	Mainly Alpha	Orthogonal Bundle	Putative cytoplasmic protein	Putative cytoplasmic protein	CATH (4.3.0)
B	1.10.3100.10	Mainly Alpha	Orthogonal Bundle	Putative cytoplasmic protein	Putative cytoplasmic protein	CATH (4.3.0)
C	1.10.3100.10	Mainly Alpha	Orthogonal Bundle	Putative cytoplasmic protein	Putative cytoplasmic protein	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF14590	Domain of unknown function (DUF4447) (DUF4447)	Domain of unknown function (DUF4447)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Hypothetical protein SO3848	DNA binding binding organic cyclic compound binding nucleic acid binding cation binding ion binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR027909	Protein of unknown function DUF4447	Family
A, B, C, D	IPR027910	YdiL domain superfamily	Homologous Superfamily
A, B, C, D	IPR010982	Lambda repressor-like, DNA-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.