1URO

UROPORPHYRINOGEN DECARBOXYLASE

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Structure Motif: Primary M-CSA Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1uroa_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	UROD/MetE-like	Uroporphyrinogen decarboxylase, UROD	Uroporphyrinogen decarboxylase, UROD	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	UROD/MetE-like	8040335	3000657	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	URO-D	e1uroA1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: URO-D	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.20.20.210	Alpha Beta	Alpha-Beta Barrel	TIM Barrel		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF01208	Uroporphyrinogen decarboxylase (URO-D) (URO-D)	Uroporphyrinogen decarboxylase (URO-D)	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	PROTEIN (UROPORPHYRINOGEN DECARBOXYLASE)	uroporphyrinogen decarboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity	heme A biosynthetic process pigment metabolic process heme metabolic process porphyrin-containing compound biosynthetic process organonitrogen compound metabolic process tetrapyrrole metabolic process heme biosynthetic process organonitrogen compound biosynthetic process pigment biosynthetic process organic cyclic compound metabolic process organic substance metabolic process tetrapyrrole biosynthetic process biosynthetic process organic cyclic compound biosynthetic process heme a metabolic process heme A biosynthetic process pigment metabolic process heme metabolic process porphyrin-containing compound biosynthetic process organonitrogen compound metabolic process tetrapyrrole metabolic process heme biosynthetic process organonitrogen compound biosynthetic process pigment biosynthetic process organic cyclic compound metabolic process organic substance metabolic process tetrapyrrole biosynthetic process biosynthetic process organic cyclic compound biosynthetic process heme a metabolic process organic substance biosynthetic process metabolic process porphyrin-containing compound metabolic process organonitrogen compound catabolic process catabolic process organic cyclic compound catabolic process porphyrin-containing compound catabolic process organic substance catabolic process tetrapyrrole catabolic process heme O metabolic process heme O biosynthetic process protoporphyrinogen IX metabolic process protoporphyrinogen IX biosynthetic process heme B biosynthetic process heme B metabolic process	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR006361	Uroporphyrinogen decarboxylase HemE	Family
A	IPR000257	Uroporphyrinogen decarboxylase (URO-D)	Domain
A	IPR038071	UROD/MetE-like superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P06132	hepatoerythropoietic porphyria porphyria cutanea tarda familial porphyria cutanea tarda inherited porphyria head and neck cancer Cancer of Head malignant tumor of neck ovarian cancer cutaneous porphyria lymphoplasmacytic lymphoma neoplasm of neck dermatomyositis head and neck neoplasm inborn errors of metabolism malignant mesothelioma hepatoerythropoietic porphyria porphyria cutanea tarda familial porphyria cutanea tarda inherited porphyria head and neck cancer Cancer of Head malignant tumor of neck ovarian cancer cutaneous porphyria lymphoplasmacytic lymphoma neoplasm of neck dermatomyositis head and neck neoplasm inborn errors of metabolism malignant mesothelioma osteosarcoma tuberculosis

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

Chains	Enzyme Name	Description	Catalytic Residues
A	uroporphyrinogen decarboxylase M-CSA #914	Uroporphyrinogen decarboxylase (HemE) catalyses the fifth step in heme biosynthesis by converting uroporphyrinogen III to coproporphyrinogen III by decarboxylating the four acetate side chains of the substrate.	Defined by 5 residues: ARG:A-37ARG:A-41ARG:A-50ASP:A-86TYR:A-164 \| Explore in 3D: M-CSA Motif Definition Search M-CSA Motif EC: 4.1.1.37 (PDB Primary Data) Search M-CSA Motif + EC 4.1.1.37

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.