1R0N

Crystal Structure of Heterodimeric Ecdsyone receptor DNA binding complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C [auth A]	d1r0na1	Small proteins	Glucocorticoid receptor-like (DNA-binding domain)	Glucocorticoid receptor-like (DNA-binding domain)	Nuclear receptor	Retinoid X receptor (RXR-alpha) DNA-binding domain	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C [auth A]	d1r0na2	Artifacts	Tags	Tags	Tags	C-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D [auth B]	d1r0nb_	Small proteins	Glucocorticoid receptor-like (DNA-binding domain)	Glucocorticoid receptor-like (DNA-binding domain)	Nuclear receptor	Ecdysone receptor DNA-binding domain	fruit fly (Drosophila melanogaster ) [TaxId: 7227 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth A]	SCOP2B Superfamily	Glucocorticoid receptor-like (DNA-binding domain)	8039031	3000068	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	Glucocorticoid receptor-like (DNA-binding domain)	8042220	3000068	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth A]	zf-C4	e1r0nA1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: zf-C4	ECOD (1.6)
D [auth B]	zf-C4	e1r0nB1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: zf-C4	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C [auth A]	3.30.50.10	Alpha Beta	2-Layer Sandwich	Erythroid Transcription Factor GATA-1	Chain A	CATH (4.3.0)
D [auth B]	3.30.50.10	Alpha Beta	2-Layer Sandwich	Erythroid Transcription Factor GATA-1	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth A]	PF00105	Zinc finger, C4 type (two domains) (zf-C4)	Zinc finger, C4 type (two domains)	In nearly all cases, this is the DNA binding domain of a nuclear hormone receptor. The alignment contains two Zinc finger domains that are too dissimilar to be aligned with each other.	Domain
D [auth B]	PF00105	Zinc finger, C4 type (two domains) (zf-C4)	Zinc finger, C4 type (two domains)	In nearly all cases, this is the DNA binding domain of a nuclear hormone receptor. The alignment contains two Zinc finger domains that are too dissimilar to be aligned with each other.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth C]	Ecdsyone Response Element	-	-	-
B [auth D]	Ecdysone Response Element	-	-	-
C [auth A]	Retinoic acid receptor RXR-alpha	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding organic cyclic compound binding nucleic acid binding transcription regulatory region nucleic acid binding ion binding small molecule binding transcription factor binding transcription coregulator binding protein binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding organic cyclic compound binding nucleic acid binding transcription regulatory region nucleic acid binding ion binding small molecule binding transcription factor binding transcription coregulator binding protein binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity LBD domain binding protein domain specific binding nuclear receptor activity molecular transducer activity ligand-activated transcription factor activity signaling receptor activity retinoic acid binding organic acid binding isoprenoid binding retinoid binding anion binding lipid binding carboxylic acid binding monocarboxylic acid binding identical protein binding RNA polymerase II-specific DNA-binding transcription factor binding nuclear receptor binding DNA-binding transcription factor binding nuclear vitamin D receptor binding retinoic acid-responsive element binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding RNA polymerase II cis-regulatory region sequence-specific DNA binding nuclear steroid receptor activity DNA binding domain binding peptide binding cation binding transition metal ion binding zinc ion binding metal ion binding enzyme binding	positive regulation of cholesterol efflux regulation of localization transport positive regulation of sterol transport positive regulation of biological process regulation of lipid transport organic hydroxy compound transport localization regulation of cholesterol efflux sterol transport regulation of cholesterol transport positive regulation of cholesterol transport regulation of sterol transport regulation of biological process positive regulation of cholesterol efflux regulation of localization transport positive regulation of sterol transport positive regulation of biological process regulation of lipid transport organic hydroxy compound transport localization regulation of cholesterol efflux sterol transport regulation of cholesterol transport positive regulation of cholesterol transport regulation of sterol transport regulation of biological process regulation of transport organic substance transport biological regulation lipid localization lipid transport positive regulation of lipid localization establishment of localization positive regulation of lipid transport positive regulation of transport regulation of lipid localization macromolecule localization cholesterol transport cholesterol efflux regulation of transporter activity positive regulation of molecular function regulation of molecular function positive regulation of transporter activity multicellular organismal process regulation of developmental process regulation of biomineral tissue development regulation of bone mineralization positive regulation of ossification positive regulation of developmental process multicellular organism development positive regulation of biomineral tissue development ossification anatomical structure development biomineral tissue development regulation of multicellular organismal process developmental process regulation of multicellular organismal development bone mineralization animal organ development tissue development positive regulation of bone mineralization positive regulation of multicellular organismal process regulation of ossification cellular response to stimulus regulation of cellular process intracellular receptor signaling pathway response to stimulus signaling retinoic acid receptor signaling pathway cell communication cellular process signal transduction peroxisome proliferator activated receptor signaling pathway mRNA transcription by RNA polymerase II cellular biosynthetic process RNA metabolic process mRNA transcription nucleobase-containing compound metabolic process RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process organic substance metabolic process transcription by RNA polymerase II organic substance biosynthetic process cellular metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process biosynthetic process organic cyclic compound biosynthetic process metabolic process macromolecule metabolic process negative regulation of biological process negative regulation of cellular metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process regulation of RNA metabolic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process regulation of gene expression negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process negative regulation of cellular process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of macromolecule metabolic process regulation of cellular biosynthetic process negative regulation of biosynthetic process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of macromolecule metabolic process positive regulation of nucleobase-containing compound metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of cellular metabolic process positive regulation of biosynthetic process positive regulation of cellular process positive regulation of RNA biosynthetic process positive regulation of cellular biosynthetic process positive regulation of cell communication thyroid hormone mediated signaling pathway response to organic substance positive regulation of signal transduction regulation of signal transduction hormone-mediated signaling pathway positive regulation of response to stimulus cellular response to endogenous stimulus response to hormone regulation of thyroid hormone mediated signaling pathway cellular response to organic substance cellular response to hormone stimulus regulation of signaling response to endogenous stimulus cellular response to chemical stimulus positive regulation of thyroid hormone mediated signaling pathway regulation of response to stimulus response to chemical regulation of cell communication positive regulation of signaling cellular developmental process cell differentiation response to retinoic acid response to lipid response to oxygen-containing compound regulation of vitamin D receptor signaling pathway response to nutrient levels regulation of response to nutrient levels response to vitamin cellular response to vitamin D response to vitamin D response to organic cyclic compound response to nutrient cellular response to organic cyclic compound cellular response to oxygen-containing compound vitamin D receptor signaling pathway cellular response to nutrient levels cellular response to vitamin cellular response to lipid positive regulation of vitamin D receptor signaling pathway cellular response to nutrient	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol protein-containing complex transcription regulator complex intracellular organelle protein-DNA complex organelle intracellular non-membrane-bounded organelle chromatin chromosome non-membrane-bounded organelle receptor complex intracellular anatomical structure cytoplasm cellular anatomical entity cytosol protein-containing complex transcription regulator complex intracellular organelle protein-DNA complex organelle intracellular non-membrane-bounded organelle chromatin chromosome non-membrane-bounded organelle receptor complex membrane-bounded organelle mitochondrion intracellular membrane-bounded organelle RNA polymerase II transcription regulator complex nucleus nuclear protein-containing complex membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
D [auth B]	Ecdysone receptor	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding organic cyclic compound binding nucleic acid binding transcription regulatory region nucleic acid binding core promoter sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity nuclear receptor activity DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding organic cyclic compound binding nucleic acid binding transcription regulatory region nucleic acid binding core promoter sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity nuclear receptor activity molecular transducer activity ligand-activated transcription factor activity signaling receptor activity DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity transcription factor binding transcription coregulator binding transcription corepressor binding protein binding signaling receptor binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding RNA polymerase II cis-regulatory region sequence-specific DNA binding protein heterodimerization activity protein dimerization activity identical protein binding protein homodimerization activity transcription coactivator binding DNA-binding transcription factor binding steroid binding lipid binding sterol binding alcohol binding hormone binding ecdysone binding small molecule binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding	developmental process multicellular organismal process head development mushroom body development animal organ development brain development nervous system development multicellular organism development central nervous system development anatomical structure development system development membrane organization import into cell transport developmental process multicellular organismal process head development mushroom body development animal organ development brain development nervous system development multicellular organism development central nervous system development anatomical structure development system development membrane organization import into cell transport establishment of localization vesicle-mediated transport cellular component organization localization phagocytosis, engulfment membrane invagination cellular process phagocytosis cellular component organization or biogenesis endocytosis plasma membrane invagination heart development cellular developmental process cardiocyte differentiation circulatory system development cardioblast differentiation stem cell differentiation cell differentiation spermatid development spermatid differentiation sexual reproduction spermatogenesis reproductive process cellularization cell development cellular process involved in reproduction in multicellular organism developmental process involved in reproduction gamete generation multicellular organismal reproductive process sperm individualization male gamete generation anatomical structure morphogenesis anatomical structure formation involved in morphogenesis germ cell development developmental maturation generation of neurons neurogenesis neuron differentiation neuron remodeling anatomical structure maturation neuron development neuron maturation cell maturation cellular catabolic process catabolic process cellular metabolic process autophagy metabolic process process utilizing autophagic mechanism cell fate commitment involved in pattern specification anterior/posterior pattern specification pattern specification process dorsal vessel heart proper cell fate commitment regionalization embryonic heart tube anterior/posterior pattern specification cardiac cell fate commitment cell fate commitment chitin-based cuticle development cuticle development embryo development ending in birth or egg hatching embryonic morphogenesis germ-band shortening embryo development embryonic development via the syncytial blastoderm response to organic substance response to ketone response to sterol response to ecdysone response to stimulus response to lipid response to alcohol response to chemical response to oxygen-containing compound response to organic cyclic compound regulation of biological process positive regulation of programmed cell death regulation of cellular process regulation of apoptotic process biological regulation positive regulation of biological process regulation of programmed cell death cell death positive regulation of apoptotic process apoptotic process programmed cell death positive regulation of cellular process larval central nervous system remodeling instar larval or pupal development post-embryonic animal morphogenesis post-embryonic development behavior locomotory behavior larval behavior larval wandering behavior larval locomotory behavior compound eye photoreceptor fate commitment sensory organ development photoreceptor cell differentiation visual system development eye morphogenesis compound eye morphogenesis eye photoreceptor cell differentiation photoreceptor cell fate commitment animal organ morphogenesis sensory system development eye photoreceptor cell fate commitment eye development neuron fate commitment compound eye development sensory organ morphogenesis compound eye photoreceptor cell differentiation head involution cell adhesion larval development cell population proliferation regulation of developmental process regulation of hemocyte proliferation immune system process regulation of cell population proliferation regulation of multicellular organismal process regulation of immune system process hemocyte proliferation Malpighian tubule development renal system development tube morphogenesis renal tubule development hindgut development epithelial tube morphogenesis epithelium development Malpighian tubule morphogenesis digestive system development tube development hindgut morphogenesis morphogenesis of an epithelium tissue development digestive tract development tissue morphogenesis digestive tract morphogenesis embryonic hindgut morphogenesis renal tubule morphogenesis cardiac muscle tissue development striated muscle tissue development muscle tissue development regulation of development, heterochronic negative regulation of biological process negative regulation of cellular metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II organic substance biosynthetic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process primary metabolic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process organic cyclic compound metabolic process regulation of gene expression biosynthetic process negative regulation of macromolecule biosynthetic process organic cyclic compound biosynthetic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleic acid biosynthetic process organic substance metabolic process negative regulation of cellular process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process negative regulation of biosynthetic process female gamete generation epithelial cell differentiation follicle cell of egg chamber development tissue migration ameboidal-type cell migration epithelial cell migration cell migration cell motility oogenesis follicle cell of egg chamber migration epithelium migration epithelial cell development border follicle cell migration cellular response to stimulus cellular response to ecdysone intracellular receptor signaling pathway signaling hormone-mediated signaling pathway cell communication cellular response to endogenous stimulus response to hormone response to steroid hormone cellular response to sterol signal transduction cellular response to organic substance cellular response to ketone cellular response to steroid hormone stimulus cellular response to hormone stimulus ecdysone receptor-mediated signaling pathway response to endogenous stimulus cellular response to organic cyclic compound cellular response to oxygen-containing compound cellular response to chemical stimulus steroid hormone mediated signaling pathway cellular response to alcohol cellular response to lipid nuclear receptor signaling pathway intracellular steroid hormone receptor signaling pathway positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of macromolecule metabolic process positive regulation of nucleobase-containing compound metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of cellular metabolic process positive regulation of biosynthetic process positive regulation of RNA biosynthetic process positive regulation of cellular biosynthetic process regulation of Malpighian tubule size regulation of biological quality regulation of tube diameter regulation of Malpighian tubule diameter regulation of tube size regulation of anatomical structure size metamorphosis regulation of neuron remodeling regulation of cell differentiation positive regulation of cell maturation regulation of neuron maturation positive regulation of neuron remodeling regulation of cell development positive regulation of developmental process positive regulation of cell differentiation regulation of cell maturation positive regulation of neuron maturation positive regulation of cell development regulation of neuron differentiation imaginal disc morphogenesis histoblast morphogenesis cell morphogenesis instar larval or pupal morphogenesis imaginal disc development epidermis development appendage development post-embryonic appendage morphogenesis wing disc development imaginal disc-derived wing morphogenesis imaginal disc-derived appendage morphogenesis wing disc morphogenesis appendage morphogenesis imaginal disc-derived appendage development rhythmic process circadian sleep/wake cycle, sleep circadian sleep/wake cycle rhythmic behavior regulation of circadian sleep/wake cycle circadian rhythm regulation of circadian rhythm regulation of behavior circadian behavior positive regulation of behavior positive regulation of circadian rhythm positive regulation of multicellular organismal process sleep positive regulation of circadian sleep/wake cycle, sleep regulation of circadian sleep/wake cycle, sleep circadian sleep/wake cycle process sterol homeostasis chemical homeostasis homeostatic process cholesterol homeostasis lipid homeostasis cell projection organization plasma membrane bounded cell projection morphogenesis neuron projection development cell projection morphogenesis neuron projection morphogenesis dendrite development plasma membrane bounded cell projection organization dendrite morphogenesis cell morphogenesis involved in neuron differentiation ecdysis, chitin-based cuticle molting cycle molting cycle process molting cycle, chitin-based cuticle system process learning or memory long-term memory nervous system process cognition memory determination of adult lifespan chitin-based embryonic cuticle biosynthetic process peripheral nervous system development prepupal development pupariation hatching organism emergence from protective structure regulation of catabolic process regulation of autophagy regulation of cellular catabolic process negative regulation of gene expression cellular respiration energy derivation by oxidation of organic compounds regulation of generation of precursor metabolites and energy generation of precursor metabolites and energy regulation of cellular respiration response to organonitrogen compound response to nitrogen compound response to cocaine response to alkaloid	intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle polytene chromosome chromosome cellular anatomical entity non-membrane-bounded organelle RNA polymerase II transcription regulator complex membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex transcription regulator complex intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle polytene chromosome chromosome cellular anatomical entity non-membrane-bounded organelle RNA polymerase II transcription regulator complex membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex transcription regulator complex repressor ecdysone receptor complex intracellular membrane-bounded organelle ecdysone receptor holocomplex somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection cytoplasm activator ecdysone receptor complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth A]	IPR001628	Zinc finger, nuclear hormone receptor-type	Domain
C [auth A]	IPR021780	Nuclear/hormone receptor activator site AF-1	Domain
C [auth A]	IPR013088	Zinc finger, NHR/GATA-type	Homologous Superfamily
C [auth A]	IPR000003	Retinoid X receptor/HNF4	Family
C [auth A]	IPR001723	Nuclear hormone receptor	Family
C [auth A]	IPR000536	Nuclear hormone receptor, ligand-binding domain	Domain
C [auth A]	IPR035500	Nuclear hormone receptor-like domain superfamily	Homologous Superfamily
D [auth B]	IPR001628	Zinc finger, nuclear hormone receptor-type	Domain
D [auth B]	IPR013088	Zinc finger, NHR/GATA-type	Homologous Superfamily
D [auth B]	IPR041889	Ecdysone receptor, ligand-binding domain	Domain
D [auth B]	IPR001723	Nuclear hormone receptor	Family
D [auth B]	IPR003069	Ecdysteroid receptor	Family
D [auth B]	IPR000536	Nuclear hormone receptor, ligand-binding domain	Domain
D [auth B]	IPR035500	Nuclear hormone receptor-like domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C [auth A]	Pharos: P19793	prostate cancer lesion of sciatic nerve sciatic neuropathy thyroid gland carcinoma amyotrophic lateral sclerosis type 1 thyroid adenoma malignant mesothelioma Sciatic Neuritis thyroid cancer astrocytic tumor invasive ductal breast carcinoma MALT lymphoma osteosarcoma pituitary cancer B-cell chronic lymphocytic leukemia prostate cancer lesion of sciatic nerve sciatic neuropathy thyroid gland carcinoma amyotrophic lateral sclerosis type 1 thyroid adenoma malignant mesothelioma Sciatic Neuritis thyroid cancer astrocytic tumor invasive ductal breast carcinoma MALT lymphoma osteosarcoma pituitary cancer B-cell chronic lymphocytic leukemia lung carcinoma medulloblastoma ovarian cancer primary cutaneous T-cell lymphoma interstitial cystitis large cell medulloblastoma pancreatic ductal adenocarcinoma

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.