Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyAristolochene/pentalenene synthase8026488 4001461 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyTerpenoid synthases8038867 3001615 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyTerpenoid synthases8038867 3001615 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF19086e1ps1A1 A: alpha bundlesX: Terpenoid synthases (From Topology)H: Terpenoid synthases (From Topology)T: Terpenoid synthasesF: PF19086ECOD (1.6)
BPF19086e1ps1B1 A: alpha bundlesX: Terpenoid synthases (From Topology)H: Terpenoid synthases (From Topology)T: Terpenoid synthasesF: PF19086ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.10.600.10 Mainly Alpha Orthogonal Bundle Farnesyl Diphosphate Synthase Farnesyl Diphosphate SynthaseCATH (4.3.0)
B1.10.600.10 Mainly Alpha Orthogonal Bundle Farnesyl Diphosphate Synthase Farnesyl Diphosphate SynthaseCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF19086Terpene synthase family 2, C-terminal metal binding (Terpene_syn_C_2)Terpene synthase family 2, C-terminal metal binding- Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR034686Terpene cyclase-like 2Family
A, B
IPR008949Isoprenoid synthase domain superfamilyHomologous Superfamily

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

ChainsEnzyme NameDescriptionCatalytic Residues
pentalenene synthase  M-CSA #89

Pentalenene synthase is structurally related to farnesyl diphosphate synthase, in accordance with the hypothesis that successive enzymes on a biosynthetic pathway are often evolutionarily related. Pentalene is a sesquiterpene that is a precursor for the pentalenolactone family of antibiotics. The sequiterpene family of secondary metabolites is a very large one, being secreted by plants, fungi and some microorganisms.

Defined by 13 residues: PHE:A-76PHE:A-77ASP:A-80ASP:A-84ARG:A-157ARG:A-173ASN:A-219SER:A-223LYS:A-226GLU:A-227ARG:A-230TRP:A-308HIS:A-309
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Explore in 3DM-CSA Motif Definition
Up to 10 residues are supported for Structure Motif searching, this motif has 13 residues.
EC: 4.6.1.5 (PDB Primary Data)