1PKP
THE STRUCTURE OF RIBOSOMAL PROTEIN S5 REVEALS SITES OF INTERACTION WITH 16S RRNA
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1pkpa1 | Alpha and beta proteins (a+b) | Ribosomal protein S5 domain 2-like | Ribosomal protein S5 domain 2-like | Translational machinery components | Ribosomal protein S5, C-terminal domain | (Geobacillus stearothermophilus ) [TaxId: 1422 ], | SCOPe (2.08) |
A | d1pkpa2 | Alpha and beta proteins (a+b) | dsRBD-like | dsRNA-binding domain-like | Ribosomal S5 protein, N-terminal domain | Ribosomal S5 protein, N-terminal domain | (Geobacillus stearothermophilus ) [TaxId: 1422 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Translational machinery components | 8022042 | 4000951 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Ribosomal S5 protein N-terminal domain | 8022718 | 4001180 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ribosomal protein S5 domain 2-like | 8034422 | 3000100 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | dsRNA-binding domain-like | 8035098 | 3000985 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF03719 | e1pkpA2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF03719 | ECOD (1.6) |
A | PF00333 | e1pkpA1 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: PF00333 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.160.20 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | CATH (4.3.0) | |
A | 3.30.230.10 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S5 | domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | - | Domain | |
PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000851 | Small ribosomal subunit protein uS5 | Family | |
IPR005324 | Small ribosomal subunit protein uS5, C-terminal | Domain | |
IPR013810 | Small ribosomal subunit protein uS5, N-terminal | Domain | |
IPR020568 | Ribosomal protein uS5 domain 2-type superfamily | Homologous Superfamily | |
IPR018192 | Small ribosomal subunit protein uS5, N-terminal, conserved site | Conserved Site | |
IPR005712 | Small ribosomal subunit protein uS5, bacterial-type | Family | |
IPR014721 | Small ribosomal subunit protein uS5 domain 2-type fold, subgroup | Homologous Superfamily |