Annotations: 1OQE

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1oqea_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1oqeb_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d1oqec_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d1oqed_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E	d1oqee_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F	d1oqef_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
G	d1oqeg_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
H	d1oqeh_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
I	d1oqei_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
J	d1oqej_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
K	d1oqek_	Small proteins	TNF receptor-like	TNF receptor-like	BAFF receptor-like	Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
L	d1oqel_	Small proteins	TNF receptor-like	TNF receptor-like	BAFF receptor-like	Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
N	d1oqen_	Small proteins	TNF receptor-like	TNF receptor-like	BAFF receptor-like	Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
O	d1oqeo_	Small proteins	TNF receptor-like	TNF receptor-like	BAFF receptor-like	Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
P	d1oqep_	Small proteins	TNF receptor-like	TNF receptor-like	BAFF receptor-like	Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
Q	d1oqeq_	Small proteins	TNF receptor-like	TNF receptor-like	BAFF receptor-like	Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
R	d1oqer_	Small proteins	TNF receptor-like	TNF receptor-like	BAFF receptor-like	Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
M	d1oqem_	Small proteins	TNF receptor-like	TNF receptor-like	BAFF receptor-like	Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)
K	SCOP2 Family	BAFF receptor-like	8021866	4003853	SCOP2 (2022-06-29)
K	SCOP2 Superfamily	TNF receptor-like	8034246	3000971	SCOP2 (2022-06-29)
L	SCOP2B Superfamily	TNF receptor-like	8034246	3000971	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	TNF receptor-like	8034246	3000971	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	TNF receptor-like	8034246	3000971	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	TNF receptor-like	8034246	3000971	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	TNF receptor-like	8034246	3000971	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	TNF receptor-like	8034246	3000971	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00229	e1oqeA1	A: beta sandwiches	X: jelly-roll	H: TNF-like (From Topology)	T: TNF-like	F: PF00229	ECOD (1.6)
B	PF00229	e1oqeB1	A: beta sandwiches	X: jelly-roll	H: TNF-like (From Topology)	T: TNF-like	F: PF00229	ECOD (1.6)
C	PF00229	e1oqeC1	A: beta sandwiches	X: jelly-roll	H: TNF-like (From Topology)	T: TNF-like	F: PF00229	ECOD (1.6)
D	PF00229	e1oqeD1	A: beta sandwiches	X: jelly-roll	H: TNF-like (From Topology)	T: TNF-like	F: PF00229	ECOD (1.6)
E	PF00229	e1oqeE1	A: beta sandwiches	X: jelly-roll	H: TNF-like (From Topology)	T: TNF-like	F: PF00229	ECOD (1.6)
F	PF00229	e1oqeF1	A: beta sandwiches	X: jelly-roll	H: TNF-like (From Topology)	T: TNF-like	F: PF00229	ECOD (1.6)
G	PF00229	e1oqeG1	A: beta sandwiches	X: jelly-roll	H: TNF-like (From Topology)	T: TNF-like	F: PF00229	ECOD (1.6)
H	PF00229	e1oqeH1	A: beta sandwiches	X: jelly-roll	H: TNF-like (From Topology)	T: TNF-like	F: PF00229	ECOD (1.6)
I	PF00229	e1oqeI1	A: beta sandwiches	X: jelly-roll	H: TNF-like (From Topology)	T: TNF-like	F: PF00229	ECOD (1.6)
J	PF00229	e1oqeJ1	A: beta sandwiches	X: jelly-roll	H: TNF-like (From Topology)	T: TNF-like	F: PF00229	ECOD (1.6)
K	PF09256	e1oqeK1	A: few secondary structure elements	X: EGF-like	H: EGF-related	T: TNF receptor-like	F: PF09256	ECOD (1.6)
L	PF09256	e1oqeL1	A: few secondary structure elements	X: EGF-like	H: EGF-related	T: TNF receptor-like	F: PF09256	ECOD (1.6)
N	PF09256	e1oqeN1	A: few secondary structure elements	X: EGF-like	H: EGF-related	T: TNF receptor-like	F: PF09256	ECOD (1.6)
O	PF09256	e1oqeO1	A: few secondary structure elements	X: EGF-like	H: EGF-related	T: TNF receptor-like	F: PF09256	ECOD (1.6)
P	PF09256	e1oqeP1	A: few secondary structure elements	X: EGF-like	H: EGF-related	T: TNF receptor-like	F: PF09256	ECOD (1.6)
Q	PF09256	e1oqeQ1	A: few secondary structure elements	X: EGF-like	H: EGF-related	T: TNF receptor-like	F: PF09256	ECOD (1.6)
R	PF09256	e1oqeR1	A: few secondary structure elements	X: EGF-like	H: EGF-related	T: TNF receptor-like	F: PF09256	ECOD (1.6)
M	PF09256	e1oqeM1	A: few secondary structure elements	X: EGF-like	H: EGF-related	T: TNF receptor-like	F: PF09256	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
B	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
C	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
D	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
E	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
F	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
G	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
H	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
I	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
J	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	PF00229	TNF(Tumour Necrosis Factor) family (TNF)	TNF(Tumour Necrosis Factor) family	-	Domain
K, L, M, N, O K, L, M, N, O, P, Q, R	PF09256	BAFF-R, TALL-1 binding (BaffR-Tall_bind)	BAFF-R, TALL-1 binding	Members of this family, which are predominantly found in the tumour necrosis factor receptor superfamily member 13c, BAFF-R, are required for binding to tumour necrosis factor ligand TALL-1 [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	Tumor necrosis factor ligand superfamily member 13B, soluble form	protein binding binding signaling receptor binding molecular function activator activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity cytokine activity cytokine receptor binding tumor necrosis factor receptor superfamily binding tumor necrosis factor receptor binding	multicellular organismal process regulation of cellular process regulation of leukocyte activation positive regulation of biological process regulation of cell activation lymphocyte activation leukocyte activation positive regulation of lymphocyte activation positive regulation of cell activation regulation of B cell activation positive regulation of leukocyte activation regulation of multicellular organismal process regulation of immune system process positive regulation of immune system process multicellular organismal process regulation of cellular process regulation of leukocyte activation positive regulation of biological process regulation of cell activation lymphocyte activation leukocyte activation positive regulation of lymphocyte activation positive regulation of cell activation regulation of B cell activation positive regulation of leukocyte activation regulation of multicellular organismal process regulation of immune system process positive regulation of immune system process positive regulation of cellular process regulation of biological process B cell costimulation B cell activation cell activation biological regulation positive regulation of B cell activation immune system process lymphocyte costimulation positive regulation of multicellular organismal process cellular process regulation of lymphocyte activation developmental process cellular developmental process hemopoiesis cell development mononuclear cell differentiation lymphocyte differentiation B cell differentiation cell differentiation anatomical structure development leukocyte differentiation B cell homeostasis multicellular organismal-level homeostasis leukocyte homeostasis homeostatic process homeostasis of number of cells lymphocyte homeostasis adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains positive regulation of germinal center formation response to stimulus regulation of developmental process positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains regulation of germinal center formation positive regulation of response to stimulus positive regulation of developmental process regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains positive regulation of immune response germinal center formation positive regulation of adaptive immune response regulation of anatomical structure morphogenesis immune response regulation of adaptive immune response adaptive immune response anatomical structure morphogenesis regulation of response to stimulus anatomical structure formation involved in morphogenesis regulation of immune response cellular response to stimulus signaling signal transduction cell communication cell population proliferation B cell proliferation leukocyte proliferation mononuclear cell proliferation lymphocyte proliferation T cell activation T cell proliferation response to organic substance cell surface receptor signaling pathway response to cytokine cytokine-mediated signaling pathway cellular response to chemical stimulus cellular response to tumor necrosis factor response to chemical tumor necrosis factor-mediated signaling pathway cellular response to cytokine stimulus cellular response to organic substance response to tumor necrosis factor positive regulation of leukocyte cell-cell adhesion leukocyte cell-cell adhesion positive regulation of cell-cell adhesion cell adhesion cell-cell adhesion regulation of cell-cell adhesion positive regulation of T cell activation positive regulation of cell adhesion regulation of cell adhesion regulation of T cell activation regulation of leukocyte cell-cell adhesion T cell costimulation positive regulation of cell population proliferation positive regulation of B cell proliferation regulation of B cell proliferation positive regulation of mononuclear cell proliferation regulation of lymphocyte proliferation regulation of leukocyte proliferation positive regulation of lymphocyte proliferation regulation of cell population proliferation positive regulation of leukocyte proliferation regulation of mononuclear cell proliferation positive regulation of T cell proliferation regulation of T cell proliferation	anchoring junction cell junction cellular anatomical entity focal adhesion cell-substrate junction membrane cell periphery plasma membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle intracellular membrane-bounded organelle cytoplasm anchoring junction cell junction cellular anatomical entity focal adhesion cell-substrate junction membrane cell periphery plasma membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle intracellular membrane-bounded organelle cytoplasm extracellular region perinuclear region of cytoplasm extracellular space
K, L, M, N, O K, L, M, N, O, P, Q, R	Tumor necrosis factor receptor superfamily member 13C	molecular transducer activity signaling receptor activity	multicellular organismal process regulation of cellular process regulation of leukocyte activation positive regulation of biological process regulation of cell activation positive regulation of leukocyte cell-cell adhesion lymphocyte activation leukocyte cell-cell adhesion leukocyte activation positive regulation of cell-cell adhesion positive regulation of lymphocyte activation positive regulation of cell activation cell adhesion cell-cell adhesion T cell activation multicellular organismal process regulation of cellular process regulation of leukocyte activation positive regulation of biological process regulation of cell activation positive regulation of leukocyte cell-cell adhesion lymphocyte activation leukocyte cell-cell adhesion leukocyte activation positive regulation of cell-cell adhesion positive regulation of lymphocyte activation positive regulation of cell activation cell adhesion cell-cell adhesion T cell activation positive regulation of leukocyte activation regulation of multicellular organismal process regulation of immune system process regulation of cell-cell adhesion positive regulation of immune system process positive regulation of cellular process regulation of biological process positive regulation of T cell activation positive regulation of cell adhesion regulation of cell adhesion cell activation biological regulation regulation of T cell activation immune system process lymphocyte costimulation regulation of leukocyte cell-cell adhesion positive regulation of multicellular organismal process cellular process T cell costimulation regulation of lymphocyte activation regulation of B cell activation B cell costimulation B cell activation positive regulation of B cell activation positive regulation of cell population proliferation positive regulation of B cell proliferation leukocyte proliferation regulation of B cell proliferation lymphocyte proliferation positive regulation of mononuclear cell proliferation regulation of lymphocyte proliferation regulation of leukocyte proliferation cell population proliferation positive regulation of lymphocyte proliferation B cell proliferation regulation of cell population proliferation mononuclear cell proliferation positive regulation of leukocyte proliferation regulation of mononuclear cell proliferation response to stimulus immune response adaptive immune response positive regulation of T cell proliferation T cell proliferation regulation of T cell proliferation cellular response to stimulus response to organic substance cell surface receptor signaling pathway signaling response to cytokine cytokine-mediated signaling pathway cell communication cellular response to chemical stimulus cellular response to tumor necrosis factor response to chemical tumor necrosis factor-mediated signaling pathway cellular response to cytokine stimulus cellular response to organic substance signal transduction response to tumor necrosis factor	cell periphery plasma membrane membrane cellular anatomical entity cell surface external side of plasma membrane side of membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR008983	Tumour necrosis factor-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR006052	Tumour necrosis factor domain	Domain
K, L, M, N, O K, L, M, N, O, P, Q, R	IPR015336	Tumour necrosis factor receptor 13C, TALL-1 binding domain	Domain
K, L, M, N, O K, L, M, N, O, P, Q, R	IPR022338	Tumour necrosis factor receptor 13C	Family
K, L, M, N, O K, L, M, N, O, P, Q, R	IPR043521	Tumor necrosis factor receptor 13C/17	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	Pharos: Q9Y275	multiple sclerosis ovarian cancer sarcoidosis systemic lupus erythematosus arthritic joint disease breast cancer cystic fibrosis glioblastoma interstitial cystitis large cell medulloblastoma medulloblastoma non-small cell lung carcinoma pancreatic ductal adenocarcinoma Sjogren syndrome tuberculosis multiple sclerosis ovarian cancer sarcoidosis systemic lupus erythematosus arthritic joint disease breast cancer cystic fibrosis glioblastoma interstitial cystitis large cell medulloblastoma medulloblastoma non-small cell lung carcinoma pancreatic ductal adenocarcinoma Sjogren syndrome tuberculosis astrocytic tumor chronic obstructive pulmonary disease Duchenne muscular dystrophy head and neck cancer invasive ductal breast carcinoma lung carcinoma Mood Disorders osteosarcoma pilocytic astrocytoma subependymal giant cell astrocytoma ulcerative colitis autoimmune disease Crohn disease gastric carcinoma hematologic disease juvenile dermatomyositis malignant glioma
K, L, M, N, O K, L, M, N, O, P, Q, R	Pharos: Q96RJ3	common variable immunodeficiency agammaglobulinemia Acquired Hypogammaglobulinemia immunodeficiency, common variable, 4 interstitial cystitis osteosarcoma tuberculosis medulloblastoma primitive neuroectodermal tumor ulcerative colitis B cell deficiency brain injury ductal breast carcinoma in situ nasopharyngeal carcinoma Sjogren syndrome

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.