1OEY

Heterodimer of p40phox and p67phox PB1 domains from human NADPH oxidase

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1oeya1	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	CAD & PB1 domains	PB1 domain	Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1oeya2	Artifacts	Tags	Tags	Tags	N-terminal Tags	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d1oeyc_	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	CAD & PB1 domains	PB1 domain	Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1oeyb1	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	CAD & PB1 domains	PB1 domain	Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1oeyb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d1oeyd1	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	CAD & PB1 domains	PB1 domain	Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d1oeyd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
H [auth M]	d1oeym_	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	CAD & PB1 domains	PB1 domain	Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase)	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E [auth J]	d1oeyj_	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	CAD & PB1 domains	PB1 domain	Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase)	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F [auth K]	d1oeyk_	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	CAD & PB1 domains	PB1 domain	Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase)	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
G [auth L]	d1oeyl_	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	CAD & PB1 domains	PB1 domain	Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase)	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	PB1 domain	8025034	4003488	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	CAD & PB1 domains	8037413	3000318	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	CAD & PB1 domains	8037413	3000318	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	CAD & PB1 domains	8037413	3000318	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	CAD & PB1 domains	8037413	3000318	SCOP2B (2022-06-29)
H [auth M]	SCOP2B Superfamily	CAD & PB1 domains	8037415	3000318	SCOP2B (2022-06-29)
E [auth J]	SCOP2 Family	PB1 domain	8025036	4003488	SCOP2 (2022-06-29)
E [auth J]	SCOP2 Superfamily	CAD & PB1 domains	8037415	3000318	SCOP2 (2022-06-29)
F [auth K]	SCOP2B Superfamily	CAD & PB1 domains	8037415	3000318	SCOP2B (2022-06-29)
G [auth L]	SCOP2B Superfamily	CAD & PB1 domains	8037415	3000318	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00564	e1oeyA1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: PF00564	ECOD (1.6)
C	PF00564	e1oeyC1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: PF00564	ECOD (1.6)
B	PF00564	e1oeyB1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: PF00564	ECOD (1.6)
D	PF00564	e1oeyD1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: PF00564	ECOD (1.6)
H [auth M]	PF00564	e1oeyM1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: PF00564	ECOD (1.6)
E [auth J]	PF00564	e1oeyJ1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: PF00564	ECOD (1.6)
F [auth K]	PF00564	e1oeyK1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: PF00564	ECOD (1.6)
G [auth L]	PF00564	e1oeyL1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: PF00564	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
C	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
B	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
D	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
H [auth M]	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
E [auth J]	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
F [auth K]	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
G [auth L]	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00564	PB1 domain (PB1)	PB1 domain	-	Domain
E [auth J], F [auth K], G [auth L], H [auth M]	PF00564	PB1 domain (PB1)	PB1 domain	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	NEUTROPHIL CYTOSOL FACTOR 2	small GTPase binding protein binding binding enzyme binding GTPase binding superoxide-generating NADPH oxidase activator activity enzyme regulator activity enzyme activator activity molecular function activator activity molecular function regulator activity oxidoreductase activity superoxide-generating NAD(P)H oxidase activity oxidoreductase activity, acting on NAD(P)H catalytic activity small GTPase binding protein binding binding enzyme binding GTPase binding superoxide-generating NADPH oxidase activator activity enzyme regulator activity enzyme activator activity molecular function activator activity molecular function regulator activity oxidoreductase activity superoxide-generating NAD(P)H oxidase activity oxidoreductase activity, acting on NAD(P)H catalytic activity oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor electron transfer activity	superoxide metabolic process superoxide anion generation cellular metabolic process reactive oxygen species metabolic process metabolic process cellular process localization import into cell transport phagocytosis endocytosis establishment of localization vesicle-mediated transport response to stimulus superoxide metabolic process superoxide anion generation cellular metabolic process reactive oxygen species metabolic process metabolic process cellular process localization import into cell transport phagocytosis endocytosis establishment of localization vesicle-mediated transport response to stimulus defense response response to stress cellular defense response respiratory burst biological process involved in interspecies interaction between organisms immune response response to other organism defense response to symbiont response to external stimulus response to biotic stimulus immune system process defense response to other organism innate immune response response to external biotic stimulus	membrane cellular anatomical entity membrane-bounded organelle phagolysosome intracellular anatomical structure lytic vacuole intracellular vesicle vacuole phagocytic vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle secondary lysosome membrane cellular anatomical entity membrane-bounded organelle phagolysosome intracellular anatomical structure lytic vacuole intracellular vesicle vacuole phagocytic vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle secondary lysosome cytoplasm vesicle endocytic vesicle lysosome cytosol cell periphery plasma membrane protein-containing complex catalytic complex plasma membrane protein complex NADPH oxidase complex membrane protein complex oxidoreductase complex acrosomal vesicle endomembrane system secretory granule secretory vesicle
E [auth J], F [auth K], G [auth L], H [auth M]	NEUTROPHIL CYTOSOL FACTOR 4	superoxide-generating NADPH oxidase activator activity enzyme regulator activity enzyme activator activity molecular function activator activity molecular function regulator activity binding phospholipid binding lipid binding phosphatidylinositol-3-phosphate binding phosphatidylinositol phosphate binding phosphatidylinositol binding	superoxide metabolic process superoxide anion generation cellular metabolic process reactive oxygen species metabolic process metabolic process cellular process localization import into cell transport phagocytosis endocytosis establishment of localization vesicle-mediated transport respiratory burst	membrane cellular anatomical entity membrane-bounded organelle phagolysosome intracellular anatomical structure lytic vacuole intracellular vesicle vacuole phagocytic vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle secondary lysosome membrane cellular anatomical entity membrane-bounded organelle phagolysosome intracellular anatomical structure lytic vacuole intracellular vesicle vacuole phagocytic vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle secondary lysosome cytoplasm vesicle endocytic vesicle lysosome cytosol endosome membrane endosome endomembrane system cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane organelle membrane cell periphery plasma membrane protein-containing complex catalytic complex plasma membrane protein complex NADPH oxidase complex membrane protein complex oxidoreductase complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR034889	Neutrophil cytosol factor 2, SH3 domain	Domain
A, B, C, D	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
A, B, C, D	IPR000270	PB1 domain	Domain
A, B, C, D	IPR001452	SH3 domain	Domain
A, B, C, D	IPR036028	SH3-like domain superfamily	Homologous Superfamily
A, B, C, D	IPR034885	Neutrophil cytosol factor 2, PB1 domain	Domain
A, B, C, D	IPR035546	Neutrophil cytosol factor 2, SH3 domain 1	Domain
A, B, C, D	IPR019734	Tetratricopeptide repeat	Repeat
E [auth J], F [auth K], G [auth L], H [auth M]	IPR000919	Neutrophil cytosol factor P40	Family
E [auth J], F [auth K], G [auth L], H [auth M]	IPR034912	Neutrophil cytosol factor 4, PX domain	Domain
E [auth J], F [auth K], G [auth L], H [auth M]	IPR001683	Phox homology	Domain
E [auth J], F [auth K], G [auth L], H [auth M]	IPR000270	PB1 domain	Domain
E [auth J], F [auth K], G [auth L], H [auth M]	IPR036871	PX domain superfamily	Homologous Superfamily
E [auth J], F [auth K], G [auth L], H [auth M]	IPR001452	SH3 domain	Domain
E [auth J], F [auth K], G [auth L], H [auth M]	IPR034853	Neutrophil cytosol factor P40, PB1 domain	Domain
E [auth J], F [auth K], G [auth L], H [auth M]	IPR035541	Neutrophil cytosol factor P40, SH3 domain	Domain
E [auth J], F [auth K], G [auth L], H [auth M]	IPR036028	SH3-like domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: P19878	chronic granulomatous disease granulomatous disease, chronic, autosomal recessive, cytochrome b-positive, type 2 rheumatoid arthritis systemic lupus erythematosus osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia breast cancer cystic fibrosis invasive ductal breast carcinoma lung carcinoma malignant glioma myositis ovarian cancer phagocyte bactericidal dysfunction systemic sclerosis chronic granulomatous disease granulomatous disease, chronic, autosomal recessive, cytochrome b-positive, type 2 rheumatoid arthritis systemic lupus erythematosus osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia breast cancer cystic fibrosis invasive ductal breast carcinoma lung carcinoma malignant glioma myositis ovarian cancer phagocyte bactericidal dysfunction systemic sclerosis celiac disease diabetes mellitus IgA glomerulonephritis lung adenocarcinoma lupus erythematosus malignant pancreatic neoplasm non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma ulcerative colitis glioblastoma interstitial cystitis lung cancer malignant ependymoma MALT lymphoma
E [auth J], F [auth K], G [auth L], H [auth M]	Pharos: Q15080	chronic granulomatous disease Crohn disease granulomatous disease, chronic, autosomal recessive, cytochrome b-positive, type 3 heart disease periodontitis Regional enteritis acute myeloid leukemia glioblastoma ileocolitis lung cancer non-small cell lung carcinoma phagocyte bactericidal dysfunction tuberculosis adrenal cortex carcinoma interstitial cystitis chronic granulomatous disease Crohn disease granulomatous disease, chronic, autosomal recessive, cytochrome b-positive, type 3 heart disease periodontitis Regional enteritis acute myeloid leukemia glioblastoma ileocolitis lung cancer non-small cell lung carcinoma phagocyte bactericidal dysfunction tuberculosis adrenal cortex carcinoma interstitial cystitis lung carcinoma osteosarcoma pilocytic astrocytoma ulcerative colitis allergic rhinitis Crohn's colitis cutaneous lupus erythematosus invasive ductal breast carcinoma malignant glioma

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.