1NOI

COMPLEX OF GLYCOGEN PHOSPHORYLASE WITH A TRANSITION STATE ANALOGUE NOJIRIMYCIN TETRAZOLE AND PHOSPHATE IN THE T AND R STATES

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1noia_	Alpha and beta proteins (a/b)	UDP-Glycosyltransferase/glycogen phosphorylase	UDP-Glycosyltransferase/glycogen phosphorylase	Oligosaccharide phosphorylase	Glycogen phosphorylase	(Oryctolagus cuniculus ) [TaxId: 9986 ],	SCOPe (2.08)
B	d1noib_	Alpha and beta proteins (a/b)	UDP-Glycosyltransferase/glycogen phosphorylase	UDP-Glycosyltransferase/glycogen phosphorylase	Oligosaccharide phosphorylase	Glycogen phosphorylase	(Oryctolagus cuniculus ) [TaxId: 9986 ],	SCOPe (2.08)
C	d1noic_	Alpha and beta proteins (a/b)	UDP-Glycosyltransferase/glycogen phosphorylase	UDP-Glycosyltransferase/glycogen phosphorylase	Oligosaccharide phosphorylase	Glycogen phosphorylase	(Oryctolagus cuniculus ) [TaxId: 9986 ],	SCOPe (2.08)
D	d1noid_	Alpha and beta proteins (a/b)	UDP-Glycosyltransferase/glycogen phosphorylase	UDP-Glycosyltransferase/glycogen phosphorylase	Oligosaccharide phosphorylase	Glycogen phosphorylase	(Oryctolagus cuniculus ) [TaxId: 9986 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Type B glycosyltransferase-like	8033137	3001586	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Type B glycosyltransferase-like	8033137	3001586	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Type B glycosyltransferase-like	8033137	3001586	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Type B glycosyltransferase-like	8033137	3001586	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Phosphorylase_C	e1noiA2	A: a/b three-layered sandwiches	X: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	T: UDP-Glycosyltransferase/glycogen phosphorylase	F: Phosphorylase_C	ECOD (1.6)
A	Phosphorylase_N	e1noiA1	A: a/b three-layered sandwiches	X: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	T: UDP-Glycosyltransferase/glycogen phosphorylase	F: Phosphorylase_N	ECOD (1.6)
B	Phosphorylase_C	e1noiB2	A: a/b three-layered sandwiches	X: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	T: UDP-Glycosyltransferase/glycogen phosphorylase	F: Phosphorylase_C	ECOD (1.6)
B	Phosphorylase_N	e1noiB1	A: a/b three-layered sandwiches	X: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	T: UDP-Glycosyltransferase/glycogen phosphorylase	F: Phosphorylase_N	ECOD (1.6)
C	Phosphorylase_C	e1noiC2	A: a/b three-layered sandwiches	X: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	T: UDP-Glycosyltransferase/glycogen phosphorylase	F: Phosphorylase_C	ECOD (1.6)
C	Phosphorylase_N	e1noiC1	A: a/b three-layered sandwiches	X: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	T: UDP-Glycosyltransferase/glycogen phosphorylase	F: Phosphorylase_N	ECOD (1.6)
D	Phosphorylase_C	e1noiD1	A: a/b three-layered sandwiches	X: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	T: UDP-Glycosyltransferase/glycogen phosphorylase	F: Phosphorylase_C	ECOD (1.6)
D	Phosphorylase_N	e1noiD2	A: a/b three-layered sandwiches	X: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	H: UDP-Glycosyltransferase/glycogen phosphorylase (From Topology)	T: UDP-Glycosyltransferase/glycogen phosphorylase	F: Phosphorylase_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.2000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycogen Phosphorylase B	CATH (4.3.0)
B	3.40.50.2000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycogen Phosphorylase B	CATH (4.3.0)
C	3.40.50.2000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycogen Phosphorylase B	CATH (4.3.0)
D	3.40.50.2000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycogen Phosphorylase B	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00343	Carbohydrate phosphorylase (Phosphorylase)	Carbohydrate phosphorylase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	GLYCOGEN PHOSPHORYLASE	glycosyltransferase activity transferase activity hexosyltransferase activity catalytic activity SHG alpha-glucan phosphorylase activity 1,4-alpha-oligoglucan phosphorylase activity glycogen phosphorylase activity vitamin binding vitamin B6 binding pyridoxal phosphate binding ion binding binding organic cyclic compound binding anion binding glycosyltransferase activity transferase activity hexosyltransferase activity catalytic activity SHG alpha-glucan phosphorylase activity 1,4-alpha-oligoglucan phosphorylase activity glycogen phosphorylase activity vitamin binding vitamin B6 binding pyridoxal phosphate binding ion binding binding organic cyclic compound binding anion binding heterocyclic compound binding small molecule binding nucleoside phosphate binding nucleotide binding linear malto-oligosaccharide phosphorylase activity	carbohydrate metabolic process catabolic process glucan catabolic process energy derivation by oxidation of organic compounds glycogen metabolic process cellular metabolic process carbohydrate catabolic process primary metabolic process generation of precursor metabolites and energy macromolecule catabolic process polysaccharide metabolic process organic substance metabolic process glucan metabolic process glycogen catabolic process polysaccharide catabolic process carbohydrate metabolic process catabolic process glucan catabolic process energy derivation by oxidation of organic compounds glycogen metabolic process cellular metabolic process carbohydrate catabolic process primary metabolic process generation of precursor metabolites and energy macromolecule catabolic process polysaccharide metabolic process organic substance metabolic process glucan metabolic process glycogen catabolic process polysaccharide catabolic process metabolic process energy reserve metabolic process cellular process macromolecule metabolic process organic substance catabolic process	intracellular anatomical structure skeletal muscle myofibril cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle contractile muscle fiber cytoplasm supramolecular fiber myofibril supramolecular polymer supramolecular complex non-membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR000811	Glycosyl transferase, family 35	Family
A, B, C, D	IPR035090	Phosphorylase pyridoxal-phosphate attachment site	Conserved Site
A, B, C, D	IPR011833	Glycogen/starch/alpha-glucan phosphorylase	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.