Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1nnxa_ All beta proteins OB-fold Hypothetical protein YgiW Hypothetical protein YgiW Hypothetical protein YgiW (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyYgiW-like8024482 4000868 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyYgiW-like8036861 3001828 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ABOFe1nnxA1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: BOFECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.40.50.200 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Bacterial OB-foldCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF04076Bacterial OB fold (BOF) protein (BOF)Bacterial OB fold (BOF) proteinProteins in this family form an OB-fold. Analysis of the predicted binding site of BOF family proteins implies that they lack nucleic acid-binding properties [1]. They contain an predicted N-terminal signal peptide which indicates that they localis ...Proteins in this family form an OB-fold. Analysis of the predicted binding site of BOF family proteins implies that they lack nucleic acid-binding properties [1]. They contain an predicted N-terminal signal peptide which indicates that they localise in the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands [1]. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the BOF ligand-binding site may be associated with the presence of BOF proteins in mobile genetic elements and their potential role in bacterial pathogenicity [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Protein ygiW-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR016052YgiW/YdeIFamily
IPR036700Bacterial OB-fold superfamilyHomologous Superfamily
IPR005220Bacterial OB-foldDomain