1M8V
Structure of Pyrococcus abyssii Sm Protein in Complex with a Uridine Heptamer
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
M [auth F] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
N [auth G] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
Q [auth J] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
R [auth K] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
S [auth L] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
U [auth N] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
H [auth A] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
I [auth B] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
J [auth C] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
K [auth D] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
L [auth E] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
O [auth H] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
P [auth I] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
T [auth M] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
M [auth F] | PF01423 | e1m8vF1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
N [auth G] | PF01423 | e1m8vG1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
Q [auth J] | PF01423 | e1m8vJ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
R [auth K] | PF01423 | e1m8vK1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
S [auth L] | PF01423 | e1m8vL1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
U [auth N] | PF01423 | e1m8vN1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
H [auth A] | PF01423 | e1m8vA1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
I [auth B] | PF01423 | e1m8vB1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
J [auth C] | PF01423 | e1m8vC1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
K [auth D] | PF01423 | e1m8vD1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
L [auth E] | PF01423 | e1m8vE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
O [auth H] | PF01423 | e1m8vH1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
P [auth I] | PF01423 | e1m8vI1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
T [auth M] | PF01423 | e1m8vM1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01423 | LSM domain (LSM) | LSM domain | The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001163 | Sm domain, eukaryotic/archaea-type | Domain | |
IPR016487 | Sm-like protein Lsm6/SmF | Family | |
IPR010920 | LSM domain superfamily | Homologous Superfamily | |
IPR047575 | Sm domain | Domain | |
IPR022901 | snRNP Sm-like, putative, archaea | Family |