1M70

Crystal structure of oxidized recombinant cytochrome c4 from Pseudomonas stutzeri

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1m70a1	All alpha proteins	Cytochrome c	Cytochrome c	Two-domain cytochrome c	Cytochrome c4	(Stutzerimonas stutzeri ) [TaxId: 316 ],	SCOPe (2.08)
B	d1m70b1	All alpha proteins	Cytochrome c	Cytochrome c	Two-domain cytochrome c	Cytochrome c4	(Stutzerimonas stutzeri ) [TaxId: 316 ],	SCOPe (2.08)
C	d1m70c1	All alpha proteins	Cytochrome c	Cytochrome c	Two-domain cytochrome c	Cytochrome c4	(Stutzerimonas stutzeri ) [TaxId: 316 ],	SCOPe (2.08)
D	d1m70d1	All alpha proteins	Cytochrome c	Cytochrome c	Two-domain cytochrome c	Cytochrome c4	(Stutzerimonas stutzeri ) [TaxId: 316 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Two-domain cytochrome c	8023943	4000660	SCOP2 (2022-06-29)
A	SCOP2 Family	Two-domain cytochrome c	8023945	4000660	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cytochrome c	8036322	3000815	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cytochrome c	8036324	3000815	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Cytochrome c	8036324	3000815	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cytochrome c	8036322	3000815	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cytochrome c	8036322	3000815	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cytochrome c	8036324	3000815	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Cytochrome c	8036322	3000815	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Cytochrome c	8036324	3000815	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Cytochrome_CBB3	e1m70A2	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: Cytochrome_CBB3	ECOD (1.6)
A	Cytochrom_C	e1m70A1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: Cytochrom_C	ECOD (1.6)
B	Cytochrome_CBB3	e1m70B2	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: Cytochrome_CBB3	ECOD (1.6)
B	Cytochrom_C	e1m70B1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: Cytochrom_C	ECOD (1.6)
C	Cytochrome_CBB3	e1m70C2	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: Cytochrome_CBB3	ECOD (1.6)
C	Cytochrom_C	e1m70C1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: Cytochrom_C	ECOD (1.6)
D	Cytochrome_CBB3	e1m70D2	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: Cytochrome_CBB3	ECOD (1.6)
D	Cytochrom_C	e1m70D1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: Cytochrom_C	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
B	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
C	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
D	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00034	Cytochrome c (Cytochrom_C)	Cytochrome c	The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, Pfam:PF06181, has now been merged into this family.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Cytochrome c4	binding organic cyclic compound binding tetrapyrrole binding heme binding electron transfer activity cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding	-	periplasmic space cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR036909	Cytochrome c-like domain superfamily	Homologous Superfamily
A, B, C, D	IPR009056	Cytochrome c-like domain	Domain
A, B, C, D	IPR024167	Cytochrome c4-like	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D	OPM				Cytochrome c

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.