1LGH

CRYSTAL STRUCTURE OF THE LIGHT-HARVESTING COMPLEX II (B800-850) FROM RHODOSPIRILLUM MOLISCHIANUM

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C [auth D]	d1lghd_	Membrane and cell surface proteins and peptides	Light-harvesting complex subunits	Light-harvesting complex subunits	Light-harvesting complex subunits	Light-harvesting complex subunits	(Magnetospirillum molischianum ) [TaxId: 1083 ],	SCOPe (2.08)
E [auth G]	d1lghg_	Membrane and cell surface proteins and peptides	Light-harvesting complex subunits	Light-harvesting complex subunits	Light-harvesting complex subunits	Light-harvesting complex subunits	(Magnetospirillum molischianum ) [TaxId: 1083 ],	SCOPe (2.08)
G [auth J]	d1lghj_	Membrane and cell surface proteins and peptides	Light-harvesting complex subunits	Light-harvesting complex subunits	Light-harvesting complex subunits	Light-harvesting complex subunits	(Magnetospirillum molischianum ) [TaxId: 1083 ],	SCOPe (2.08)
A	d1lgha_	Membrane and cell surface proteins and peptides	Light-harvesting complex subunits	Light-harvesting complex subunits	Light-harvesting complex subunits	Light-harvesting complex subunits	(Magnetospirillum molischianum ) [TaxId: 1083 ],	SCOPe (2.08)
B	d1lghb_	Membrane and cell surface proteins and peptides	Light-harvesting complex subunits	Light-harvesting complex subunits	Light-harvesting complex subunits	Light-harvesting complex subunits	(Magnetospirillum molischianum ) [TaxId: 1083 ],	SCOPe (2.08)
D [auth E]	d1lghe_	Membrane and cell surface proteins and peptides	Light-harvesting complex subunits	Light-harvesting complex subunits	Light-harvesting complex subunits	Light-harvesting complex subunits	(Magnetospirillum molischianum ) [TaxId: 1083 ],	SCOPe (2.08)
F [auth H]	d1lghh_	Membrane and cell surface proteins and peptides	Light-harvesting complex subunits	Light-harvesting complex subunits	Light-harvesting complex subunits	Light-harvesting complex subunits	(Magnetospirillum molischianum ) [TaxId: 1083 ],	SCOPe (2.08)
H [auth K]	d1lghk_	Membrane and cell surface proteins and peptides	Light-harvesting complex subunits	Light-harvesting complex subunits	Light-harvesting complex subunits	Light-harvesting complex subunits	(Magnetospirillum molischianum ) [TaxId: 1083 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth D]	SCOP2B Superfamily	Light-harvesting complex subunits	8037857	3000199	SCOP2B (2022-06-29)
E [auth G]	SCOP2B Superfamily	Light-harvesting complex subunits	8037857	3000199	SCOP2B (2022-06-29)
G [auth J]	SCOP2B Superfamily	Light-harvesting complex subunits	8037857	3000199	SCOP2B (2022-06-29)
A	SCOP2 Family	Light-harvesting complex subunits	8025478	4003043	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Light-harvesting complex subunits	8037857	3000199	SCOP2 (2022-06-29)
B	SCOP2 Family	Light-harvesting complex subunits	8076358	4003043	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Light-harvesting complex subunits	8076359	3000199	SCOP2 (2022-06-29)
D [auth E]	SCOP2B Superfamily	Light-harvesting complex subunits	8076359	3000199	SCOP2B (2022-06-29)
F [auth H]	SCOP2B Superfamily	Light-harvesting complex subunits	8076359	3000199	SCOP2B (2022-06-29)
H [auth K]	SCOP2B Superfamily	Light-harvesting complex subunits	8076359	3000199	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth D]	LHC_like	e1lghD1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
E [auth G]	LHC_like	e1lghG1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
G [auth J]	LHC_like	e1lghJ1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
A	LHC_like	e1lghA1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
B	LHC_like	e1lghB1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
D [auth E]	LHC_like	e1lghE1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
F [auth H]	LHC_like	e1lghH1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
H [auth K]	LHC_like	e1lghK1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C [auth D]	4.10.220.20	Few Secondary Structures	Irregular	Light-harvesting Protein	Light-harvesting complex	CATH (4.3.0)
E [auth G]	4.10.220.20	Few Secondary Structures	Irregular	Light-harvesting Protein	Light-harvesting complex	CATH (4.3.0)
G [auth J]	4.10.220.20	Few Secondary Structures	Irregular	Light-harvesting Protein	Light-harvesting complex	CATH (4.3.0)
A	4.10.220.20	Few Secondary Structures	Irregular	Light-harvesting Protein	Light-harvesting complex	CATH (4.3.0)
B	1.20.5.250	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
D [auth E]	1.20.5.250	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
F [auth H]	1.20.5.250	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
H [auth K]	1.20.5.250	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C [auth D], E [auth G], G [auth J]	PF00556	Antenna complex alpha/beta subunit (LHC)	Antenna complex alpha/beta subunit	-	Domain
B, D [auth E], F [auth H], H [auth K]	PF00556	Antenna complex alpha/beta subunit (LHC)	Antenna complex alpha/beta subunit	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C [auth D], E [auth G], G [auth J]	LIGHT HARVESTING COMPLEX II	electron transfer activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity chlorophyll binding binding organic cyclic compound binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction cellular metabolic process metabolic process cellular process generation of precursor metabolites and energy	membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane intracellular anatomical structure organelle membrane cellular anatomical entity organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane intracellular anatomical structure organelle membrane cellular anatomical entity organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle plasma membrane-derived chromatophore intracellular membrane-bounded organelle light-harvesting complex cytoplasmic vesicle cytoplasm vesicle
B, D [auth E], F [auth H], H [auth K]	LIGHT HARVESTING COMPLEX II	electron transfer activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity chlorophyll binding binding organic cyclic compound binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction cellular metabolic process metabolic process cellular process generation of precursor metabolites and energy	cell periphery plasma membrane membrane cellular anatomical entity membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore intracellular membrane-bounded organelle light-harvesting complex intracellular organelle cytoplasmic vesicle cell periphery plasma membrane membrane cellular anatomical entity membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore intracellular membrane-bounded organelle light-harvesting complex intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C [auth D], E [auth G], G [auth J]	IPR000066	Antenna complex, alpha/beta subunit	Domain
A, C [auth D], E [auth G], G [auth J]	IPR018332	Antenna complex, alpha subunit	Family
A, C [auth D], E [auth G], G [auth J]	IPR002361	Antenna complex, alpha subunit conserved site	Conserved Site
A, C [auth D], E [auth G], G [auth J]	IPR035889	Light-harvesting complex	Homologous Superfamily
B, D [auth E], F [auth H], H [auth K]	IPR000066	Antenna complex, alpha/beta subunit	Domain
B, D [auth E], F [auth H], H [auth K]	IPR023624	Antenna complex, beta domain superfamily	Homologous Superfamily
B, D [auth E], F [auth H], H [auth K]	IPR035889	Light-harvesting complex	Homologous Superfamily
B, D [auth E], F [auth H], H [auth K]	IPR023623	Antenna complex, beta subunit, conserved site	Conserved Site
B, D [auth E], F [auth H], H [auth K]	IPR002362	Light-harvesting protein B beta chain	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C [auth D], D [auth E], E [auth G] A, B, C [auth D], D [auth E], E [auth G], F [auth H], G [auth J], H [auth K]	OPM	Transmembrane	Alpha-helical polytopic	Photosystems	Light-harvesting complexes from bacteria

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C [auth D], D [auth E], E [auth G] A, B, C [auth D], D [auth E], E [auth G], F [auth H], G [auth J], H [auth K]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C [auth D], D [auth E], E [auth G] A, B, C [auth D], D [auth E], E [auth G], F [auth H], G [auth J], H [auth K]	MemProtMD	Annotated as membrane protein by MemProtMD

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.