Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1kzla1 All beta proteins Reductase/isomerase/elongation factor common domain Riboflavin synthase domain-like Riboflavin synthase Riboflavin synthase fission yeast (Schizosaccharomyces pombe ) [TaxId: 4896 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyRiboflavin synthase8030479 4003217 SCOP2 (2022-06-29)
ASCOP2 FamilyRiboflavin synthase8030481 4003217 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyRiboflavin synthase domain-like8042858 3001812 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyRiboflavin synthase domain-like8042860 3001812 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00677e1kzlA1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00677ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.40.30.20 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu) domain 3CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00677Lumazine binding domain (Lum_binding)Lumazine binding domainThis domain binds to derivatives of lumazine in some proteins. Some proteins have lost the residues involved in binding lumazine.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Riboflavin Synthase

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

ChainsEnzyme NameDescriptionCatalytic Residues
riboflavin synthase  M-CSA #247

Riboflavin (vitamin B2) serves as a precursor of flavocoenzymes, which have essential roles as redox cofactors in all organisms. The final step in the biosynthesis of the vitamin is catalysed by the enzyme riboflavin synthase. This unusual reaction involves the dismutation of 6,7-dimethyl-8-ribityllumazine. A 4-carbon unit is transferred between two of the identical substrates to form riboflavin and 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione involving the cleavage of two C-N bonds and the formation of two C-C bonds by the transfer of a 4-carbon moiety. The three active sites of the trimer lie between pairs of monomers, although only one active site can be formed and catalytically competent at any one time. The homotrimer is non-existent in humans and is an attractive target for antimicrobial agents.

Defined by 7 residues: PHE:A-2SER:A-41CYS:A-48THR:A-50ALA:A-64HIS:A-102THR:A-148
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