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Camelid VHH Domains in Complex with Porcine Pancreatic alpha-Amylase External Resource: Annotation Chains Domain Info Class Fold Superfamily Family Domain Species Provenance Source (Version) B d1kxvb1 All beta proteins Glycosyl hydrolase domain Glycosyl hydrolase domain alpha-Amylases, C-terminal beta-sheet domain Animal alpha-amylase (Sus scrofa ) [TaxId: 9823 ], SCOPe (2.08) B d1kxvb2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain Animal alpha-amylase (Sus scrofa ) [TaxId: 9823 ], SCOPe (2.08) A d1kxva1 All beta proteins Glycosyl hydrolase domain Glycosyl hydrolase domain alpha-Amylases, C-terminal beta-sheet domain Animal alpha-amylase (Sus scrofa ) [TaxId: 9823 ], SCOPe (2.08) A d1kxva2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain Animal alpha-amylase (Sus scrofa ) [TaxId: 9823 ], SCOPe (2.08) C d1kxvc_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Camelid IG heavy chain variable domain, VHh Arabian camel (Camelus dromedarius ) [TaxId: 9838 ], SCOPe (2.08) D d1kxvd_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Camelid IG heavy chain variable domain, VHh Arabian camel (Camelus dromedarius ) [TaxId: 9838 ], SCOPe (2.08)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage Chains Type Family Name Domain Identifier Family Identifier Provenance Source (Version) B SCOP2B Superfamily (Trans)glycosidases 8033369 3000313 SCOP2B (2022-06-29) B SCOP2B Superfamily Glycosyl hydrolase domain-like 8033366 3001528 SCOP2B (2022-06-29) A SCOP2B Superfamily (Trans)glycosidases 8033369 3000313 SCOP2B (2022-06-29) A SCOP2B Superfamily Glycosyl hydrolase domain-like 8033366 3001528 SCOP2B (2022-06-29) C SCOP2 Family Antibody variable domains 8091530 4007744 SCOP2 (2022-06-29) C SCOP2 Superfamily Immunoglobulin (Ig) domain-like 8091531 3000071 SCOP2 (2022-06-29)
Chains Family Name Domain Identifier Architecture Possible Homology Homology Topology Family Provenance Source (Version) B PF02806 e1kxvB1 A: beta sandwiches X: Glycosyl hydrolase domain-like H: Glycosyl hydrolase domain (From Topology) T: Glycosyl hydrolase domain F: PF02806 ECOD (1.6) B PF00128 e1kxvB2 A: a/b barrels X: TIM beta/alpha-barrel H: TIM barrels (From Topology) T: TIM barrels F: PF00128 ECOD (1.6) A PF02806 e1kxvA1 A: beta sandwiches X: Glycosyl hydrolase domain-like H: Glycosyl hydrolase domain (From Topology) T: Glycosyl hydrolase domain F: PF02806 ECOD (1.6) A PF00128 e1kxvA2 A: a/b barrels X: TIM beta/alpha-barrel H: TIM barrels (From Topology) T: TIM barrels F: PF00128 ECOD (1.6) C PF07686 e1kxvC1 A: beta sandwiches X: Immunoglobulin-like beta-sandwich H: Immunoglobulin-related T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like F: PF07686 ECOD (1.6) D PF07686 e1kxvD1 A: beta sandwiches X: Immunoglobulin-like beta-sandwich H: Immunoglobulin-related T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like F: PF07686 ECOD (1.6)
Chain Protein Name Description Organism Name Gene Allele Name(s) Domain Name(s) Receptor Type Receptor Description Provenance Source CAB10 VH Camelus dromedarius (Arabian camel) IGHV3S52*01, IGHJ4*01 V-DOMAIN VH IG (VH) IMGT (202416-0)
Chain Chain Class Chain Subclass Chain Type Antigen Name(s) Provenance Source Heavy Chain IGHV1 - alpha-amylase, pancreatic SAbDab (2024-04-26)
Chains Accession Name Description Comments Source PF00128 Alpha amylase, catalytic domain (Alpha-amylase) Alpha amylase, catalytic domain Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, a ... Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain. Less Domain PF02806 Alpha amylase, C-terminal all-beta domain (Alpha-amylase_C) Alpha amylase, C-terminal all-beta domain Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, a ... Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain. Less Domain
Chains Polymer Molecular Function Biological Process Cellular Component ALPHA-AMYLASE, PANCREATIC CAMELID VHH DOMAIN CAB10 - - -