1JWY

CRYSTAL STRUCTURE OF THE DYNAMIN A GTPASE DOMAIN COMPLEXED WITH GDP, DETERMINED AS MYOSIN FUSION

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1jwya1	All beta proteins	SH3-like barrel	Myosin S1 fragment, N-terminal domain	Myosin S1 fragment, N-terminal domain	Myosin S1 fragment, N-terminal domain	Slime mold (Dictyostelium discoideum ) [TaxId: 44689 ], Slime mold (Dictyostelium discoideum ) [TaxId: 44689 ],	SCOPe (2.08)
A	d1jwya4	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	G proteins	Dynamin G domain	Slime mold (Dictyostelium discoideum ) [TaxId: 44689 ], Slime mold (Dictyostelium discoideum ) [TaxId: 44689 ],	SCOPe (2.08)
A	d1jwya2	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	Motor proteins	Myosin S1, motor domain	Slime mold (Dictyostelium discoideum ) [TaxId: 44689 ], Slime mold (Dictyostelium discoideum ) [TaxId: 44689 ],	SCOPe (2.08)
A	d1jwya3	Artifacts	Tags	Tags	Tags	N-terminal Tags	Slime mold (Dictyostelium discoideum ) [TaxId: 44689 ], Slime mold (Dictyostelium discoideum ) [TaxId: 44689 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Myosin s1 fragment N-terminal domain	8025053	4001735	SCOP2 (2022-06-29)
A	SCOP2 Family	Dynamin G domain-like	8019697	4004047	SCOP2 (2022-06-29)
A	SCOP2 Family	Myosin motor domain	8025050	4004054	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Myosin s1 fragment N-terminal domain	8037432	3000319	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Ras-like P-loop GTPases	8054359	3002022	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	P-loop motor domain	8037429	3002036	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Myosin_N	e1jwyA2	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Myosin_N	ECOD (1.6)
A	Myosin_head	e1jwyA1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Myosin_head	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.30.30.360	Mainly Beta	Roll	SH3 type barrels.	Myosin S1 fragment, N-terminal	CATH (4.3.0)
A	3.40.850.10	Alpha Beta	3-Layer(aba) Sandwich	Kinesin	Kinesin motor domain	CATH (4.3.0)
A	1.20.58.530	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF02736	Myosin N-terminal SH3-like domain (Myosin_N)	Myosin N-terminal SH3-like domain	This domain has an SH3-like fold. It is found at the N-terminus of many but not all myosins. The function of this domain is unknown.	Domain
A	PF01031	Dynamin central region (Dynamin_M)	Dynamin central region	-	Family
A	PF00063	Myosin head (motor domain) (Myosin_head)	Myosin head (motor domain)	-	Domain
A	PF00350	Dynamin family (Dynamin_N)	Dynamin family	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Myosin-2 heavy chain,Dynamin-A	binding phospholipid binding lipid binding profilin binding protein binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding organic cyclic compound binding binding phospholipid binding lipid binding profilin binding protein binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding organic cyclic compound binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cytoskeletal protein binding microtubule binding tubulin binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity identical protein binding actin binding protein-containing complex binding actin filament binding adenyl nucleotide binding cytoskeletal motor activity 14-3-3 protein binding adenyl ribonucleotide binding ATP binding calmodulin binding calcium-dependent ATPase activity ATP-dependent activity microfilament motor activity	cellular component organization mitochondrion distribution localization mitochondrion localization organelle organization organelle localization cellular process cellular component organization or biogenesis intracellular distribution of mitochondria mitochondrion organization developmental process anatomical structure morphogenesis sorocarp development biological process involved in intraspecies interaction between organisms cellular component organization mitochondrion distribution localization mitochondrion localization organelle organization organelle localization cellular process cellular component organization or biogenesis intracellular distribution of mitochondria mitochondrion organization developmental process anatomical structure morphogenesis sorocarp development biological process involved in intraspecies interaction between organisms anatomical structure development socially cooperative development sorocarp morphogenesis import into cell transport phagocytosis endocytosis establishment of localization vesicle-mediated transport membrane organization cytoskeleton-dependent cytokinesis mitotic cytokinetic process mitotic cytokinesis cytokinesis mitotic cell cycle mitotic cell cycle process midbody abscission cytokinetic process cell cycle cell division cell cycle process homeostatic process biological regulation phagosome maturation intracellular pH reduction regulation of intracellular pH phagosome acidification cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis regulation of pH monoatomic ion homeostasis intracellular chemical homeostasis regulation of biological quality monoatomic cation homeostasis regulation of cellular pH intracellular monoatomic ion homeostasis protein localization cellular localization protein localization to cell periphery protein localization to cell division site localization within membrane protein localization to membrane protein localization to cleavage furrow cellular macromolecule localization macromolecule localization establishment or maintenance of cell polarity biological process involved in interspecies interaction between organisms response to stimulus response to other organism response to bacterium response to external stimulus response to external biotic stimulus response to biotic stimulus organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process primary metabolic process gene expression macromolecule biosynthetic process protein processing in phagocytic vesicle protein maturation organic substance metabolic process biosynthetic process proteolysis organic substance biosynthetic process protein processing metabolic process protein metabolic process macromolecule metabolic process nucleus organization actin cytoskeleton organization actin filament organization actin filament-based process supramolecular fiber organization cytoskeleton organization pinocytosis regulation of post-lysosomal vacuole size regulation of cellular component size regulation of vesicle size regulation of anatomical structure size vesicle organization endosome organization endomembrane system organization plasma membrane bounded cell projection organization cell projection organization uropod organization uropod retraction cellular response to stimulus response to nutrient levels aggregation involved in sorocarp development cellular response to starvation cellular response to nutrient levels cellular response to stress response to stress response to starvation cellular component disassembly pseudopodium retraction pseudopodium organization actin-mediated cell contraction actin filament-based movement actin-myosin filament sliding chemotaxis taxis response to chemical locomotion cortical actin cytoskeleton organization cortical cytoskeleton organization response to organic substance response to organonitrogen compound response to organophosphorus response to oxygen-containing compound response to nitrogen compound response to purine-containing compound response to cAMP response to organic cyclic compound response to ketone response to ether response to differentiation-inducing factor 1 cell motility protein-containing complex organization myosin filament assembly myosin filament organization cellular component biogenesis cellular component assembly protein-containing complex assembly response to hydrogen peroxide response to oxidative stress response to reactive oxygen species response to inorganic substance vacuole organization contractile vacuole organization culmination involved in sorocarp development cytoplasmic actin-based contraction involved in forward cell motility cytoplasmic actin-based contraction involved in cell motility bleb assembly plasma membrane bounded cell projection assembly cell projection assembly detection of external stimulus detection of stimulus detection of mechanical stimulus response to mechanical stimulus response to abiotic stimulus detection of abiotic stimulus actin filament bundle organization contractile actin filament bundle assembly actin filament bundle assembly regulation of cytoskeleton organization regulation of cellular process regulation of cellular component organization regulation of actin filament-based process negative regulation of biological process regulation of protein-containing complex assembly negative regulation of cellular process negative regulation of protein polymerization regulation of actin filament polymerization negative regulation of supramolecular fiber organization negative regulation of actin filament polymerization protein polymerization actin polymerization or depolymerization regulation of biological process regulation of actin filament organization actin filament polymerization negative regulation of cellular component organization negative regulation of cytoskeleton organization regulation of actin polymerization or depolymerization regulation of cellular component biogenesis regulation of organelle organization negative regulation of protein-containing complex assembly negative regulation of organelle organization regulation of protein polymerization regulation of actin filament length regulation of actin cytoskeleton organization regulation of supramolecular fiber organization regulation of developmental process regulation of cell shape cell morphogenesis regulation of cell morphogenesis regulation of anatomical structure morphogenesis filopodium assembly response to osmotic stress hypotonic response	membrane cellular anatomical entity membrane-bounded organelle intracellular anatomical structure intracellular vesicle phagocytic vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle endocytic vesicle cell division site membrane cellular anatomical entity membrane-bounded organelle intracellular anatomical structure intracellular vesicle phagocytic vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle endocytic vesicle cell division site cell periphery cleavage furrow plasma membrane plasma membrane region phagocytic cup base phagocytic cup intercellular bridge polymeric cytoskeletal fiber cytoskeleton intracellular non-membrane-bounded organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton non-membrane-bounded organelle cell projection pseudopodium plasma membrane bounded cell projection pathogen-containing vacuole host cellular component host cell part actin cytoskeleton actomyosin cytosol contractile ring cell cortex cortical cytoskeleton actomyosin contractile ring cortical actin cytoskeleton protein-containing complex myosin complex myosin II complex apical part of cell cell cortex region cytoplasmic region apical cortex cell trailing edge equatorial cell cortex myosin filament early phagosome extracellular matrix external encapsulating structure uropod

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR020850	GTPase effector domain	Domain
A	IPR001401	Dynamin, GTPase domain	Domain
A	IPR045063	Dynamin, N-terminal	Domain
A	IPR030381	Dynamin-type guanine nucleotide-binding (G) domain	Domain
A	IPR019762	Dynamin, GTPase region, conserved site	Conserved Site
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR003130	Dynamin GTPase effector	Domain
A	IPR000375	Dynamin stalk domain	Domain
A	IPR022812	Dynamin	Family
A	IPR000048	IQ motif, EF-hand binding site	Binding Site
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR004009	Myosin, N-terminal, SH3-like	Domain
A	IPR036961	Kinesin motor domain superfamily	Homologous Superfamily
A	IPR001609	Myosin head, motor domain	Domain
A	IPR002928	Myosin tail	Domain
A	IPR008989	Myosin S1 fragment, N-terminal	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.