1JS1

Crystal Structure of a new transcarbamylase from the anaerobic bacterium Bacteroides fragilis at 2.0 A resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A [auth X]	d1js1x1	Alpha and beta proteins (a/b)	ATC-like	Aspartate/ornithine carbamoyltransferase	Aspartate/ornithine carbamoyltransferase	Transcarbamylase-like protein	(Bacteroides fragilis ) [TaxId: 817 ],	SCOPe (2.08)
A [auth X]	d1js1x3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Bacteroides fragilis ) [TaxId: 817 ],	SCOPe (2.08)
B [auth Y]	d1js1y1	Alpha and beta proteins (a/b)	ATC-like	Aspartate/ornithine carbamoyltransferase	Aspartate/ornithine carbamoyltransferase	Transcarbamylase-like protein	(Bacteroides fragilis ) [TaxId: 817 ],	SCOPe (2.08)
B [auth Y]	d1js1y3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Bacteroides fragilis ) [TaxId: 817 ],	SCOPe (2.08)
C [auth Z]	d1js1z1	Alpha and beta proteins (a/b)	ATC-like	Aspartate/ornithine carbamoyltransferase	Aspartate/ornithine carbamoyltransferase	Transcarbamylase-like protein	(Bacteroides fragilis ) [TaxId: 817 ],	SCOPe (2.08)
C [auth Z]	d1js1z3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Bacteroides fragilis ) [TaxId: 817 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth X]	SCOP2 Family	Aspartate/ornithine carbamoyltransferase	8027604	4000794	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Family	Aspartate/ornithine carbamoyltransferase	8027605	4000794	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Superfamily	Aspartate/ornithine carbamoyltransferase	8039983	3001396	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Superfamily	Aspartate/ornithine carbamoyltransferase	8039984	3001396	SCOP2 (2022-06-29)
B [auth Y]	SCOP2B Superfamily	Aspartate/ornithine carbamoyltransferase	8039983	3001396	SCOP2B (2022-06-29)
B [auth Y]	SCOP2B Superfamily	Aspartate/ornithine carbamoyltransferase	8039984	3001396	SCOP2B (2022-06-29)
C [auth Z]	SCOP2B Superfamily	Aspartate/ornithine carbamoyltransferase	8039984	3001396	SCOP2B (2022-06-29)
C [auth Z]	SCOP2B Superfamily	Aspartate/ornithine carbamoyltransferase	8039983	3001396	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth X]	OTCace	e1js1X2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: Aspartate/ornithine carbamoyltransferase	F: OTCace	ECOD (1.6)
A [auth X]	OTCace_N	e1js1X1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: Aspartate/ornithine carbamoyltransferase	F: OTCace_N	ECOD (1.6)
B [auth Y]	OTCace	e1js1Y2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: Aspartate/ornithine carbamoyltransferase	F: OTCace	ECOD (1.6)
B [auth Y]	OTCace_N	e1js1Y1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: Aspartate/ornithine carbamoyltransferase	F: OTCace_N	ECOD (1.6)
C [auth Z]	OTCace	e1js1Z2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: Aspartate/ornithine carbamoyltransferase	F: OTCace	ECOD (1.6)
C [auth Z]	OTCace_N	e1js1Z1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: Aspartate/ornithine carbamoyltransferase	F: OTCace_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth X]	3.40.50.1370	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Aspartate/ornithine carbamoyltransferase	CATH (4.3.0)
B [auth Y]	3.40.50.1370	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Aspartate/ornithine carbamoyltransferase	CATH (4.3.0)
C [auth Z]	3.40.50.1370	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Aspartate/ornithine carbamoyltransferase	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth X], B [auth Y], C [auth Z]	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain (OTCace_N)	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain	-	Domain
A [auth X], B [auth Y], C [auth Z]	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain (OTCace)	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth X], B [auth Y], C [auth Z]	Transcarbamylase	binding amino acid binding carboxyl- or carbamoyltransferase activity ornithine carbamoyltransferase activity transferase activity, transferring one-carbon groups transferase activity catalytic activity	ornithine metabolic process oxoacid metabolic process glutamine family amino acid biosynthetic process cellular biosynthetic process organonitrogen compound biosynthetic process amino acid metabolic process organic acid metabolic process organic acid biosynthetic process arginine biosynthetic process alpha-amino acid metabolic process carboxylic acid biosynthetic process glutamine family amino acid metabolic process arginine metabolic process non-proteinogenic amino acid metabolic process organic substance metabolic process ornithine metabolic process oxoacid metabolic process glutamine family amino acid biosynthetic process cellular biosynthetic process organonitrogen compound biosynthetic process amino acid metabolic process organic acid metabolic process organic acid biosynthetic process arginine biosynthetic process alpha-amino acid metabolic process carboxylic acid biosynthetic process glutamine family amino acid metabolic process arginine metabolic process non-proteinogenic amino acid metabolic process organic substance metabolic process organic substance biosynthetic process small molecule metabolic process organonitrogen compound metabolic process small molecule biosynthetic process cellular metabolic process carboxylic acid metabolic process primary metabolic process L-amino acid biosynthetic process L-amino acid metabolic process arginine biosynthetic process via ornithine proteinogenic amino acid metabolic process amino acid biosynthetic process biosynthetic process proteinogenic amino acid biosynthetic process metabolic process cellular process alpha-amino acid biosynthetic process citrulline metabolic process non-proteinogenic amino acid biosynthetic process citrulline biosynthetic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth X], B [auth Y], C [auth Z]	IPR006132	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding	Domain
A [auth X], B [auth Y], C [auth Z]	IPR006131	Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain	Domain
A [auth X], B [auth Y], C [auth Z]	IPR036901	Aspartate/ornithine carbamoyltransferase superfamily	Homologous Superfamily
A [auth X], B [auth Y], C [auth Z]	IPR006130	Aspartate/ornithine carbamoyltransferase	Family
A [auth X], B [auth Y], C [auth Z]	IPR043696	N-succinylornithine carbamoyltransferase ArgF'-like	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.