Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1jo0a_ Alpha and beta proteins (a+b) IF3-like YhbY-like YhbY-like YhbY homologue HI1333 (Haemophilus influenzae ) [TaxId: 727 ], SCOPe (2.08)
Bd1jo0b_ Alpha and beta proteins (a+b) IF3-like YhbY-like YhbY-like YhbY homologue HI1333 (Haemophilus influenzae ) [TaxId: 727 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyYhbY-like8030272 4002698 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyYhbY-like8042651 3001623 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyYhbY-like8042651 3001623 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ACRS1_YhbYe1jo0A1 A: a+b two layersX: IF3-likeH: YhbY-like (From Topology)T: YhbY-likeF: CRS1_YhbYECOD (1.6)
BCRS1_YhbYe1jo0B1 A: a+b two layersX: IF3-likeH: YhbY-like (From Topology)T: YhbY-likeF: CRS1_YhbYECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.110.60 Alpha Beta 2-Layer Sandwich Translation Initiation Factor IF3 YhbY-likeCATH (4.3.0)
B3.30.110.60 Alpha Beta 2-Layer Sandwich Translation Initiation Factor IF3 YhbY-likeCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF01985CRS1 / YhbY (CRM) domain (CRS1_YhbY)CRS1 / YhbY (CRM) domainEscherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been r ...Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants [4]. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing [5]. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes [4]. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [1][2].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
HYPOTHETICAL PROTEIN HI1333 - -

InterPro: Protein Family Classification InterPro Database Homepage