1J2X
Crystal structure of RAP74 C-terminal domain complexed with FCP1 C-terminal peptide
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1j2xa1 | All alpha proteins | DNA/RNA-binding 3-helical bundle | 'Winged helix' DNA-binding domain | C-terminal domain of the rap74 subunit of TFIIF | C-terminal domain of the rap74 subunit of TFIIF | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A | d1j2xa2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Winged helix DNA-binding domain | 8003444 | 3000034 | SCOP2B (2022-06-29) |
B | SCOP2 Family | FCP1 C-terminal region-like | 8044673 | 4004073 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | FCP1 C-terminal region-like | 8051971 | 3002078 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05793 | Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) (TFIIF_alpha) | Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | - | Family | |
PF09309 | FCP1, C-terminal (FCP1_C) | FCP1, C-terminal | The C-terminal domain of FCP-1 is required for interaction with the carboxy terminal domain of RAP74. Interaction relies extensively on van der Waals contacts between hydrophobic residues situated within alpha-helices in both domains [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR008851 | Transcription initiation factor IIF, alpha subunit | Family | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily | |
IPR011039 | Transcription Factor IIF, Rap30/Rap74, interaction | Homologous Superfamily | |
IPR004274 | FCP1 homology domain | Domain | |
IPR001357 | BRCT domain | Domain | |
IPR015388 | FCP1-like phosphatase, C-terminal | Domain | |
IPR036420 | BRCT domain superfamily | Homologous Superfamily | |
IPR039189 | CTD phosphatase Fcp1 | Family | |
IPR023214 | HAD superfamily | Homologous Superfamily | |
IPR011947 | FCP1-like phosphatase, phosphatase domain | Domain | |
IPR036412 | HAD-like superfamily | Homologous Superfamily |