1J11

beta-amylase from Bacillus cereus var. mycoides in complex with alpha-EPG

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1j11a1	All beta proteins	Prealbumin-like	Starch-binding domain-like	Starch-binding domain	beta-amylase	(Bacillus cereus ) [TaxId: 1396 ],	SCOPe (2.08)
A	d1j11a2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	(Trans)glycosidases	Amylase, catalytic domain	Bacterial beta-amylase	(Bacillus cereus ) [TaxId: 1396 ],	SCOPe (2.08)
B	d1j11b1	All beta proteins	Prealbumin-like	Starch-binding domain-like	Starch-binding domain	beta-amylase	(Bacillus cereus ) [TaxId: 1396 ],	SCOPe (2.08)
B	d1j11b2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	(Trans)glycosidases	Amylase, catalytic domain	Bacterial beta-amylase	(Bacillus cereus ) [TaxId: 1396 ],	SCOPe (2.08)
C	d1j11c1	All beta proteins	Prealbumin-like	Starch-binding domain-like	Starch-binding domain	beta-amylase	(Bacillus cereus ) [TaxId: 1396 ],	SCOPe (2.08)
C	d1j11c2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	(Trans)glycosidases	Amylase, catalytic domain	Bacterial beta-amylase	(Bacillus cereus ) [TaxId: 1396 ],	SCOPe (2.08)
D	d1j11d1	All beta proteins	Prealbumin-like	Starch-binding domain-like	Starch-binding domain	beta-amylase	(Bacillus cereus ) [TaxId: 1396 ],	SCOPe (2.08)
D	d1j11d2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	(Trans)glycosidases	Amylase, catalytic domain	Bacterial beta-amylase	(Bacillus cereus ) [TaxId: 1396 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Starch-binding domain-like	8032373	3000816	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	(Trans)glycosidases	8032374	3000313	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	(Trans)glycosidases	8032374	3000313	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Starch-binding domain-like	8032373	3000816	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	(Trans)glycosidases	8032374	3000313	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Starch-binding domain-like	8032373	3000816	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	(Trans)glycosidases	8032374	3000313	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Starch-binding domain-like	8032373	3000816	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00686	e1j11A1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: PF00686	ECOD (1.6)
A	PF01373	e1j11A2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF01373	ECOD (1.6)
B	PF00686	e1j11B1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: PF00686	ECOD (1.6)
B	PF01373	e1j11B2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF01373	ECOD (1.6)
C	PF00686	e1j11C1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: PF00686	ECOD (1.6)
C	PF01373	e1j11C2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF01373	ECOD (1.6)
D	PF00686	e1j11D1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: PF00686	ECOD (1.6)
D	PF01373	e1j11D2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: PF01373	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
B	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
B	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
C	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
C	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
D	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
D	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01373	Glycosyl hydrolase family 14 (Glyco_hydro_14)	Glycosyl hydrolase family 14	This family are beta amylases.	Domain
A, B, C, D	PF00686	Starch binding domain (CBM_20)	Starch binding domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Beta-amylase	hydrolase activity, acting on glycosyl bonds amylopectin maltohydrolase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity starch binding binding polysaccharide binding carbohydrate binding amylase activity beta-amylase activity cation binding ion binding metal ion binding hydrolase activity, acting on glycosyl bonds amylopectin maltohydrolase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity starch binding binding polysaccharide binding carbohydrate binding amylase activity beta-amylase activity cation binding ion binding metal ion binding small molecule binding	carbohydrate metabolic process catabolic process carbohydrate catabolic process primary metabolic process macromolecule catabolic process polysaccharide metabolic process organic substance metabolic process polysaccharide catabolic process metabolic process macromolecule metabolic process organic substance catabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B, C, D	IPR001554	Glycoside hydrolase, family 14	Family
A, B, C, D	IPR000125	Glycoside hydrolase, family 14A, bacterial	Family
A, B, C, D	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
A, B, C, D	IPR002044	Carbohydrate binding module family 20	Domain
A, B, C, D	IPR034835	Beta-amylase, CBM20 domain	Domain
A, B, C, D	IPR018238	Glycoside hydrolase, family 14, conserved site	Conserved Site

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.