Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1i3ra1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Class II MHC alpha chain, C-terminal domain house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Ad1i3ra2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC alpha chain, N-terminal domain house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Cd1i3rc1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Class II MHC alpha chain, C-terminal domain house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Cd1i3rc2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC alpha chain, N-terminal domain house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Ed1i3re1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Class II MHC alpha chain, C-terminal domain house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Ed1i3re2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC alpha chain, N-terminal domain house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Gd1i3rg1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Class II MHC alpha chain, C-terminal domain house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Gd1i3rg2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC alpha chain, N-terminal domain house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Bd1i3rb1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Class II MHC beta chain, C-terminal domain house mouse (Mus musculus ) [TaxId: 10090 ], house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Bd1i3rb2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC beta chain, N-terminal domain house mouse (Mus musculus ) [TaxId: 10090 ], house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Dd1i3rd1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Class II MHC beta chain, C-terminal domain house mouse (Mus musculus ) [TaxId: 10090 ], house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Dd1i3rd2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC beta chain, N-terminal domain house mouse (Mus musculus ) [TaxId: 10090 ], house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Fd1i3rf1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Class II MHC beta chain, C-terminal domain house mouse (Mus musculus ) [TaxId: 10090 ], house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Fd1i3rf2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC beta chain, N-terminal domain house mouse (Mus musculus ) [TaxId: 10090 ], house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Hd1i3rh1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Class II MHC beta chain, C-terminal domain house mouse (Mus musculus ) [TaxId: 10090 ], house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Hd1i3rh2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC beta chain, N-terminal domain house mouse (Mus musculus ) [TaxId: 10090 ], house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyImmunoglobulin (Ig) domain-like8054673 3000071 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMHC antigen-recognition domain8033118 3000521 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyMHC antigen-recognition domain8033118 3000521 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like8054673 3000071 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyImmunoglobulin (Ig) domain-like8054673 3000071 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyMHC antigen-recognition domain8033118 3000521 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like8054673 3000071 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyMHC antigen-recognition domain8033118 3000521 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyMHC antigen-recognition domain8055626 3000521 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like8054713 3000071 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyMHC antigen-recognition domain8055626 3000521 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like8054713 3000071 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like8054713 3000071 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyMHC antigen-recognition domain8055626 3000521 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyMHC antigen-recognition domain8055626 3000521 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like8054713 3000071 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF07654e1i3rA1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
APF00993e1i3rA2 A: a+b two layersX: MHC antigen-recognition domain (From Topology)H: MHC antigen-recognition domain (From Topology)T: MHC antigen-recognition domainF: PF00993ECOD (1.6)
CPF07654e1i3rC1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
CPF00993e1i3rC2 A: a+b two layersX: MHC antigen-recognition domain (From Topology)H: MHC antigen-recognition domain (From Topology)T: MHC antigen-recognition domainF: PF00993ECOD (1.6)
EPF07654e1i3rE1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
EPF00993e1i3rE2 A: a+b two layersX: MHC antigen-recognition domain (From Topology)H: MHC antigen-recognition domain (From Topology)T: MHC antigen-recognition domainF: PF00993ECOD (1.6)
GPF07654e1i3rG1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
GPF00993e1i3rG2 A: a+b two layersX: MHC antigen-recognition domain (From Topology)H: MHC antigen-recognition domain (From Topology)T: MHC antigen-recognition domainF: PF00993ECOD (1.6)
BPF07654e1i3rB1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
BPF00969e1i3rB2 A: a+b two layersX: MHC antigen-recognition domain (From Topology)H: MHC antigen-recognition domain (From Topology)T: MHC antigen-recognition domainF: PF00969ECOD (1.6)
DPF07654e1i3rD1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
DPF00969e1i3rD2 A: a+b two layersX: MHC antigen-recognition domain (From Topology)H: MHC antigen-recognition domain (From Topology)T: MHC antigen-recognition domainF: PF00969ECOD (1.6)
FPF07654e1i3rF1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
FPF00969e1i3rF2 A: a+b two layersX: MHC antigen-recognition domain (From Topology)H: MHC antigen-recognition domain (From Topology)T: MHC antigen-recognition domainF: PF00969ECOD (1.6)
HPF07654e1i3rH1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07654ECOD (1.6)
HPF00969e1i3rH2 A: a+b two layersX: MHC antigen-recognition domain (From Topology)H: MHC antigen-recognition domain (From Topology)T: MHC antigen-recognition domainF: PF00969ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.10.320.10 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain Chain B, domain 1CATH (4.3.0)
A2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
C3.10.320.10 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain Chain B, domain 1CATH (4.3.0)
C2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
E3.10.320.10 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain Chain B, domain 1CATH (4.3.0)
E2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
G3.10.320.10 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain Chain B, domain 1CATH (4.3.0)
G2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
B3.10.320.10 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain Chain B, domain 1CATH (4.3.0)
B2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
D3.10.320.10 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain Chain B, domain 1CATH (4.3.0)
D2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
F3.10.320.10 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain Chain B, domain 1CATH (4.3.0)
F2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
H3.10.320.10 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain Chain B, domain 1CATH (4.3.0)
H2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
A, C, E, G
pMHC84 II-ALPHA Mus musculus (house mouse) MH2-AAe, H2-EAck, H2-EAk, H2-EA G-DOMAIN G-ALPHA, C-LIKE-DOMAIN C-LIKE MH MH2-ALPHA_PEPTIDE-BETA IMGT (202416-0)
B, D, F, H
pMHC84 PEPTIDE-II-BETA Mus musculus (house mouse) H2-EB1k G-DOMAIN G-BETA, C-LIKE-DOMAIN C-LIKE MH MH2-ALPHA_PEPTIDE-BETA IMGT (202416-0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, C, E, G
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domain- Domain
A, C, E, G
PF00993Class II histocompatibility antigen, alpha domain (MHC_II_alpha)Class II histocompatibility antigen, alpha domain- Domain
B, D, F, H
PF00969Class II histocompatibility antigen, beta domain (MHC_II_beta)Class II histocompatibility antigen, beta domain- Domain
B, D, F, H
PF00042Globin (Globin)Globin- Domain
B, D, F, H
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, C, E, G
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, E-K ALPHA CHAIN
B, D, F, H
FUSION PROTEIN CONSISTING OF MHC E-BETA-K PRECURSOR, GLYCINE RICH LINKER, AND HEMOGLOBIN BETA-2 CHAIN