Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B Superfamilygalactose-binding domain-like8043343 3000087 SCOP2B (2022-06-29)
ASCOP2B SuperfamilySialidases8043344 3001607 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyE set domains8054893 3000070 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AF5_F8_type_C_1e1euuA1 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Galactose-binding domain-likeF: F5_F8_type_C_1ECOD (1.6)
ANPCBM_assoc_likee1euuA2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: NPCBM_assoc_likeECOD (1.6)
ABNR_2e1euuA3 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 6-bladedF: BNR_2ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.120.10.10 Mainly Beta 6 Propeller Neuraminidase CATH (4.3.0)
A2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
A2.60.120.260 Mainly Beta Sandwich Jelly Rolls Galactose-binding domain-likeCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00754F5/8 type C domain (F5_F8_type_C)F5/8 type C domainThis domain is also known as the discoidin (DS) domain family [1].Domain
PF13088BNR repeat-like domain (BNR_2)BNR repeat-like domain- Repeat
PF10633NPCBM-associated, NEW3 domain of alpha-galactosidase (NPCBM_assoc)NPCBM-associated, NEW3 domain of alpha-galactosidaseThe English-language version of the first reference can be found on pages 388-399 of the above. This domain has been named NEW3 but its actual function is not known. It is found on proteins which are bacterial galactosidases [1]. The domain is associ ...The English-language version of the first reference can be found on pages 388-399 of the above. This domain has been named NEW3 but its actual function is not known. It is found on proteins which are bacterial galactosidases [1]. The domain is associated with the NPCBM family, Pfam:PF08305, a novel putative carbohydrate binding module found at the N-terminus of glycosyl hydrolases.
Domain

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

ChainsEnzyme NameDescriptionCatalytic Residues
exo-alpha-sialidase (GH33 Family)  M-CSA #835

Exo sialidases (neuraminidases) catalyse the removal of terminal sialic acid residues in oligosaccharides, glycoproteins, glycolipids and synthetic substrates to release free sialic acid. This class function to release sialic acids for use as carbon and energy sources for non-pathogenic bacterium while in pathogenic microorganisms, sialidases have been suggested to be pathogenic factors.

Defined by 3 residues: ASP:A-50 [auth A-92]GLU:A-218 [auth A-260]TYR:A-328 [auth A-370]
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