Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyD-aminopeptidase middle and C-terminal domains8030361 4002614 SCOP2 (2022-06-29)
ASCOP2 FamilyD-aminopeptidase middle and C-terminal domains8030363 4002614 SCOP2 (2022-06-29)
ASCOP2 Familybeta-Lactamase/D-ala carboxypeptidase8024999 4002685 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyD-aminopeptidase associated domain-like8042740 3001485 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyD-aminopeptidase associated domain-like8042742 3001485 SCOP2 (2022-06-29)
ASCOP2 Superfamilybeta-lactamase/transpeptidase-like8037378 3001604 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ADAP_B_Ne1ei5A1 A: beta barrelsX: Lipocalins/StreptavidinH: D-aminopeptidase, middle and C-terminal domains (From Topology)T: D-aminopeptidase, middle and C-terminal domainsF: DAP_B_NECOD (1.6)
ADAP_B_Ce1ei5A2 A: beta barrelsX: Lipocalins/StreptavidinH: D-aminopeptidase, middle and C-terminal domains (From Topology)T: D-aminopeptidase, middle and C-terminal domainsF: DAP_B_CECOD (1.6)
ABeta-lactamase_1ste1ei5A3 A: alpha complex topologyX: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology)H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology)T: alpha-helical domain in beta-lactamase/transpeptidase-like proteinsF: Beta-lactamase_1stECOD (1.6)
ABeta-lactamase_2nde1ei5A4 A: a+b three layersX: Profilin-likeH: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology)T: a+b domain in beta-lactamase/transpeptidase-like proteinsF: Beta-lactamase_2ndECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.710.10 Alpha Beta 3-Layer(aba) Sandwich Beta-lactamase DD-peptidase/beta-lactamase superfamilyCATH (4.3.0)
A2.40.128.50 Mainly Beta Beta Barrel Lipocalin CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00144Beta-lactamase (Beta-lactamase)Beta-lactamaseThis family appears to be distantly related to Pfam:PF00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.Domain
PF07930D-aminopeptidase, domain B (DAP_B)D-aminopeptidase, domain BD-aminopeptidase (Swiss:Q9ZBA9) is a dimeric enzyme with each monomer being composed of three domains. Domain B is organised to form a beta barrel made up of eight antiparallel beta strands. It is connected to domain A, the catalytic domain, by an e ...D-aminopeptidase (Swiss:Q9ZBA9) is a dimeric enzyme with each monomer being composed of three domains. Domain B is organised to form a beta barrel made up of eight antiparallel beta strands. It is connected to domain A, the catalytic domain, by an eight-residue sequence, and also interacts with both domains A and C via non-covalent bonds. Domain B probably functions in maintaining domain C in a good position to interact with domain A [1].
Domain

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

ChainsEnzyme NameDescriptionCatalytic Residues
D-stereospecific aminopeptidase (peptidase S12 family)  M-CSA #782

Antibiotic resistance to the beta lactam family of antibiotics, which includes penicillin, is often conferred to bacteria by serine beta lactamases which can break down the inhibitor to harmless products. They are believed to have evolved from D amino peptidases, which hydrolyse the peptide bond between two D amino acids after the N terminal residue. DAP from Othrobacrum anthropi is one such peptidase, and is inhibited by beta lactams. Study of this protein will thus reveal details of how the antibiotic resistance conferring peptidases work. It is found to show significant active site homology with other penicillin binding proteins, including the serine beta lactamases, but very low sequence identity with either group, suggesting that it is part of a novel family which may have given rise to the resistance-conferring enzymes.

Defined by 5 residues: SER:A-62LYS:A-65TYR:A-153ASN:A-155HIS:A-287
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