Annotations: 1DDL

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C [auth A]	d1ddla_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Tymoviridae-like VP	Tymovirus coat protein	(Desmodium yellow mottle virus ) [TaxId: 70821 ],	SCOPe (2.08)
D [auth B]	d1ddlb_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Tymoviridae-like VP	Tymovirus coat protein	(Desmodium yellow mottle virus ) [TaxId: 70821 ],	SCOPe (2.08)
E [auth C]	d1ddlc_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Tymoviridae-like VP	Tymovirus coat protein	(Desmodium yellow mottle virus ) [TaxId: 70821 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth A]	SCOP2 Family	Tymoviridae-like VP	8028433	4003476	SCOP2 (2022-06-29)
C [auth A]	SCOP2 Superfamily	Positive stranded ssRNA viruses-like	8040812	3000918	SCOP2 (2022-06-29)
D [auth B]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8040812	3000918	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8040812	3000918	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth A]	Tymo_coat	e1ddlA1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Tymo_coat	ECOD (1.6)
D [auth B]	Tymo_coat	e1ddlB1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Tymo_coat	ECOD (1.6)
E [auth C]	Tymo_coat	e1ddlC1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Tymo_coat	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C [auth A]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
D [auth B]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
E [auth C]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth A], D [auth B], E [auth C]	PF00983	Tymovirus coat protein (Tymo_coat)	Tymovirus coat protein	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth D]	RNA (5'-R(PUPUPUPUPUPUP*U)-3')	-	-	-
B [auth E]	RNA (5'-R(PUPU)-3')	-	-	-
C [auth A], D [auth B], E [auth C]	DESMODIUM YELLOW MOTTLE VIRUS	structural molecule activity	-	viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth A], D [auth B], E [auth C]	IPR000574	Tymovirus coat protein	Domain
C [auth A], D [auth B], E [auth C]	IPR029053	Viral coat protein subunit	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.