1D3Y
STRUCTURE OF THE DNA TOPOISOMERASE VI A SUBUNIT
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1d3ya_ | Multi-domain proteins (alpha and beta) | DNA topoisomerase IV, alpha subunit | DNA topoisomerase IV, alpha subunit | DNA topoisomerase IV, alpha subunit | DNA topoisomerase IV, alpha subunit | (Methanocaldococcus jannaschii ) [TaxId: 2190 ], | SCOPe (2.08) |
B | d1d3yb_ | Multi-domain proteins (alpha and beta) | DNA topoisomerase IV, alpha subunit | DNA topoisomerase IV, alpha subunit | DNA topoisomerase IV, alpha subunit | DNA topoisomerase IV, alpha subunit | (Methanocaldococcus jannaschii ) [TaxId: 2190 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Top6A N-terminal domain-like | 8025178 | 4002838 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Top6A C-terminal domain-like | 8055736 | 4007651 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Winged helix DNA-binding domain | 8037557 | 3000034 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Toprim domain-like | 8055737 | 3000737 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Toprim domain-like | 8055737 | 3000737 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Winged helix DNA-binding domain | 8037557 | 3000034 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PRK04342_1st_1 | e1d3yA1 | A: beta barrels | X: all-beta domain in DNA topoisomerase IV alpha subunit (From Topology) | H: all-beta domain in DNA topoisomerase IV alpha subunit (From Topology) | T: all-beta domain in DNA topoisomerase IV alpha subunit | F: PRK04342_1st_1 | ECOD (1.6) |
A | TP6A_N | e1d3yA2 | A: alpha arrays | X: HTH | H: HTH domain in DNA topoisomerase IV alpha subunit (From Topology) | T: HTH domain in DNA topoisomerase IV alpha subunit | F: TP6A_N | ECOD (1.6) |
A | PRK04342_2nd | e1d3yA3 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Toprim domain | F: PRK04342_2nd | ECOD (1.6) |
B | PRK04342_1st_1 | e1d3yB1 | A: beta barrels | X: all-beta domain in DNA topoisomerase IV alpha subunit (From Topology) | H: all-beta domain in DNA topoisomerase IV alpha subunit (From Topology) | T: all-beta domain in DNA topoisomerase IV alpha subunit | F: PRK04342_1st_1 | ECOD (1.6) |
B | TP6A_N | e1d3yB2 | A: alpha arrays | X: HTH | H: HTH domain in DNA topoisomerase IV alpha subunit (From Topology) | T: HTH domain in DNA topoisomerase IV alpha subunit | F: TP6A_N | ECOD (1.6) |
B | PRK04342_2nd | e1d3yB3 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Toprim domain | F: PRK04342_2nd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
A | 3.40.1360.10 | Alpha Beta | 3-Layer(aba) Sandwich | Dna Topoisomerase Vi A Subunit | Chain: A, domain 2 | CATH (4.3.0) |
B | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
B | 3.40.1360.10 | Alpha Beta | 3-Layer(aba) Sandwich | Dna Topoisomerase Vi A Subunit | Chain: A, domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04406 | Type IIB DNA topoisomerase (TP6A_N) | Type IIB DNA topoisomerase | Type II DNA topoisomerases are ubiquitous enzymes that catalyse the ATP-dependent transport of one DNA duplex through a second DNA segment via a transient double-strand break. Type II DNA topoisomerases are now subdivided into two sub-families, type ... | Domain | |
PF20768 | All-beta domain in DNA topoisomerase VI alpha subunit (Topo_VI_alpha) | All-beta domain in DNA topoisomerase VI alpha subunit | In all organisms, type II DNA topoisomerases are essential for untangling chromosomal DNA. The archaeal type II protein is termed DNA topoisomerase VI. This entry represents an all beta domain found in these proteins. | Domain | |
PF21180 | Topoisomerase 6 subunit A/Spo11, Toprim domain (TOP6A-Spo11_Toprim) | Topoisomerase 6 subunit A/Spo11, Toprim domain | This topoisomerase-primase (Toprim) nucleotidyl transferase/hydrolase domain is found in the type II topoisomerase VIA and Spo11, which structurally related. Spo11 is a meiosis-specific protein that is responsible for the initiation of recombination ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR034136 | Topoisomerase 6 subunit A/Spo11, TOPRIM domain | Domain | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR002815 | Spo11/DNA topoisomerase VI subunit A | Family | |
IPR049333 | Type II DNA topoisomerase VI subunit A, all-beta domain | Domain | |
IPR036078 | Spo11/DNA topoisomerase VI subunit A superfamily | Homologous Superfamily | |
IPR013049 | Spo11/DNA topoisomerase VI, subunit A, N-terminal | Domain | |
IPR004085 | DNA topoisomerase VI, subunit A | Family |