Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
GA [auth O]d7a1go_ All beta proteins 7-bladed beta-propeller WD40 repeat-like automated matches automated matches (Saccharomyces cerevisiae S288C ) [TaxId: 559292 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth X]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like8052736 3002138 SCOP2B (2022-06-29)
J [auth X]SCOP2B SuperfamilyNucleic acid-binding proteins8052738 3000135 SCOP2B (2022-06-29)
K [auth Y]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8052974 3001284 SCOP2B (2022-06-29)
K [auth Y]SCOP2B SuperfamilyHomeodomain-like8052973 3000001 SCOP2B (2022-06-29)
L [auth Z]SCOP2B SuperfamilyTranslational machinery components8098660 3000571 SCOP2B (2022-06-29)
M [auth a]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8053136 3000068 SCOP2B (2022-06-29)
N [auth b]SCOP2B SuperfamilyRibosomal protein S88096922 3000709 SCOP2B (2022-06-29)
Q [auth e]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8053149 3000068 SCOP2B (2022-06-29)
S [auth g]SCOP2B SuperfamilyRibosomal protein S30e-like8053451 3002190 SCOP2B (2022-06-29)
B [auth P]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8061280 3001397 SCOP2B (2022-06-29)
T [auth E]SCOP2B SuperfamilyRibosomal protein S198086076 3000686 SCOP2B (2022-06-29)
V [auth B]SCOP2B SuperfamilyRibosomal protein S78065993 3000799 SCOP2B (2022-06-29)
W [auth C]SCOP2B SuperfamilyWinged helix DNA-binding domain8055713 3000034 SCOP2B (2022-06-29)
X [auth D]SCOP2B SuperfamilyL30e-like8096946 3001739 SCOP2B (2022-06-29)
Y [auth F]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8103366 3000100 SCOP2B (2022-06-29)
AA [auth I]SCOP2B SuperfamilyS13-like H2TH domain8098450 3000053 SCOP2B (2022-06-29)
CA [auth K]SCOP2B SuperfamilyRibosomal protein S108098648 3001336 SCOP2B (2022-06-29)
C [auth Q]SCOP2B SuperfamilyRibosomal S3Ae-like8053211 3002166 SCOP2B (2022-06-29)
DA [auth L]SCOP2B SuperfamilyWinged helix DNA-binding domain8059235 3000034 SCOP2B (2022-06-29)
EA [auth M]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052569 3000068 SCOP2B (2022-06-29)
HA [auth h]SCOP2B SuperfamilyNucleic acid-binding proteins8063430 3000135 SCOP2B (2022-06-29)
KA [auth x]SCOP2B SuperfamilyABC transporter-like P-loop ATPases8089770 3002020 SCOP2B (2022-06-29)
KA [auth x]SCOP2B SuperfamilyABC transporter-like P-loop ATPases8089771 3002020 SCOP2B (2022-06-29)
KA [auth x]SCOP2B Superfamily4Fe-4S ferredoxins8089767 3000020 SCOP2B (2022-06-29)
E [auth S]SCOP2B SuperfamilyAlpha-L RNA-binding motif8052758 3001473 SCOP2B (2022-06-29)
E [auth S]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8052760 3000334 SCOP2B (2022-06-29)
E [auth S]SCOP2B SuperfamilyNucleic acid-binding proteins8052759 3000135 SCOP2B (2022-06-29)
F [auth T]SCOP2B SuperfamilyGS N-terminal domain-like8053173 3000408 SCOP2B (2022-06-29)
H [auth V]SCOP2B Superfamily50S Ribosomal protein L14-like8053083 3000433 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth X]Ribosomal_S17_1e7a1gX1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
K [auth Y]Ribosomal_S13_Ne7a1gY2 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: Ribosomal_S13_NECOD (1.6)
K [auth Y]Ribosomal_S15_2e7a1gY1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_2ECOD (1.6)
L [auth Z]Ribosomal_S11e7a1gZ1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
M [auth a]Ribosomal_S21ee7a1ga1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: Ribosomal_S21eECOD (1.6)
N [auth b]Ribosomal_S8_N_1e7a1gb1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_N_1ECOD (1.6)
N [auth b]Ribosomal_S8_C_1e7a1gb2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_C_1ECOD (1.6)
O [auth c]Ribosom_S12_S23e7a1gc1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
P [auth d]Ribosomal_S24ee7a1gd1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_S24eECOD (1.6)
Q [auth e]Ribosomal_S26ee7a1ge1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S26eECOD (1.6)
R [auth f]Ribosomal_S27ee7a1gf1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27eECOD (1.6)
S [auth g]Ribosomal_S30e7a1gg1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: Ribosomal_S30ECOD (1.6)
B [auth P]Ribosomal_S2_2e7a1gP1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2_2ECOD (1.6)
T [auth E]Ribosomal_S19e7a1gE1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
U [auth A]Ribosomal_S3_Ce7a1gA1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
U [auth A]KH_2_3e7a1gA2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_3ECOD (1.6)
V [auth B]Ribosomal_S7_1e7a1gB1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
W [auth C]S10_plectine7a1gC1 A: alpha arraysX: HTHH: HTHT: wingedF: S10_plectinECOD (1.6)
X [auth D]Ribosomal_L7Aee7a1gD1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
Y [auth F]Ribosomal_S9e7a1gF1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
Z [auth H]Ribosomal_S17ee7a1gH1 A: alpha arraysX: HTHH: HTHT: FF domainF: Ribosomal_S17eECOD (1.6)
AA [auth I]Ribosomal_S13e7a1gI1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13ECOD (1.6)
BA [auth J]Ribosomal_S19ee7a1gJ1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S19eECOD (1.6)
CA [auth K]Ribosomal_S10_1e7a1gK1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_1ECOD (1.6)
C [auth Q]Ribosomal_S3Ae_Ne7a1gQ2 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: Ribosomal_S3Ae_NECOD (1.6)
C [auth Q]Ribosomal_S3Ae_Ce7a1gQ1 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: Ribosomal_S3Ae_CECOD (1.6)
DA [auth L]Ribosomal_S25e7a1gL1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S25ECOD (1.6)
EA [auth M]Ribosomal_S14_2e7a1gM1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_2ECOD (1.6)
FA [auth N]Ribosomal_S27e7a1gN1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27ECOD (1.6)
GA [auth O]ANAPC4_WD40_2e7a1gO1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_2ECOD (1.6)
HA [auth h]Ribosomal_S28ee7a1gh1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S28eECOD (1.6)
IA [auth z]F_UNCLASSIFIEDe7a1gz1 A: alpha arraysX: Eukaryotic translation initiation factor 3 subunit 1 (From Topology)H: Eukaryotic translation initiation factor 3 subunit 1 (From Topology)T: Eukaryotic translation initiation factor 3 subunit 1F: F_UNCLASSIFIEDECOD (1.6)
JA [auth y]eIF3_subunite7a1gy1 A: alpha arraysX: Eukaryotic translation initiation factor 3 subunit 1 (From Topology)H: Eukaryotic translation initiation factor 3 subunit 1 (From Topology)T: Eukaryotic translation initiation factor 3 subunit 1F: eIF3_subunitECOD (1.6)
KA [auth x]RLIe7a1gx3 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: RLIECOD (1.6)
KA [auth x]ABC_trane7a1gx1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ABC_tranECOD (1.6)
D [auth R]Ribosomal_S5_C_1e7a1gR3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_C_1ECOD (1.6)
D [auth R]Ribosomal_S5_3e7a1gR1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5_3ECOD (1.6)
D [auth R]Ribosomal_S5_2e7a1gR2 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: Ribosomal_S5_2ECOD (1.6)
E [auth S]Ribosomal_S4ee7a1gS3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S4eECOD (1.6)
E [auth S]40S_S4_Ce7a1gS2 A: beta barrelsX: SH3H: SH3T: SH3F: 40S_S4_CECOD (1.6)
E [auth S]RS4NTe7a1gS1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: RS4NTECOD (1.6)
F [auth T]Ribosomal_S6ee7a1gT1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_S6eECOD (1.6)
G [auth U]Ribosomal_S7e_Ne7a1gU2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_NECOD (1.6)
G [auth U]Ribosomal_S7e_C_2e7a1gU1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_C_2ECOD (1.6)
H [auth V]Ribosomal_S8ee7a1gV1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_S8eECOD (1.6)
I [auth W]S4e7a1gW1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth X]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
J [auth X]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
K [auth Y]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
K [auth Y]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
L [auth Z]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
M [auth a]PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
N [auth b]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
O [auth c]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
P [auth d]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
Q [auth e]PF01283Ribosomal protein S26e (Ribosomal_S26e)Ribosomal protein S26e- Family
R [auth f]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
S [auth g]PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
B [auth P]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
T [auth E]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
U [auth A]PF07650KH domain (KH_2)KH domain- Domain
U [auth A]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
V [auth B]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
W [auth C]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
X [auth D]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
Y [auth F]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
Z [auth H]PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
AA [auth I]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
BA [auth J]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
CA [auth K]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
DA [auth L]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
EA [auth M]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
FA [auth N]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
GA [auth O]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
HA [auth h]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
IA [auth z],
JA [auth y]
PF08597Translation initiation factor eIF3 subunit (eIF3_subunit)Translation initiation factor eIF3 subunit- Family
KA [auth x]PF04068Possible Fer4-like domain in RNase L inhibitor, RLI (RLI)Possible Fer4-like domain in RNase L inhibitor, RLI- Family
KA [auth x]PF000374Fe-4S binding domain (Fer4)4Fe-4S binding domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich.Domain
KA [auth x]PF00005ABC transporter (ABC_tran)ABC transporterABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ...ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain Pfam:PF00664. These four domains may belong to a single polypeptide as in Swiss:P13569, or belong in different polypeptide chains.
Domain
D [auth R]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
D [auth R]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
E [auth S]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
E [auth S]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
E [auth S]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
E [auth S]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
E [auth S]PF00467KOW motif (KOW)KOW motif- Family
F [auth T]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
G [auth U]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
H [auth V]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
I [auth W]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
I [auth W]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 2]18S ribosomal RNA---
J [auth X]40S ribosomal protein S11-A
K [auth Y]40S ribosomal protein S13
L [auth Z]40S ribosomal protein S14-B
M [auth a]40S ribosomal protein S21-A
N [auth b]40S ribosomal protein S22-A
O [auth c]40S ribosomal protein S23-A
P [auth d]40S ribosomal protein S24-A
Q [auth e]40S ribosomal protein S26-B
R [auth f]40S ribosomal protein S27-A
S [auth g]40S ribosomal protein S30-A
B [auth P]40S ribosomal protein S0-A
T [auth E]40S ribosomal protein S15
U [auth A]40S ribosomal protein S3
V [auth B]40S ribosomal protein S5
W [auth C]40S ribosomal protein S10-A
X [auth D]40S ribosomal protein S12
Y [auth F]40S ribosomal protein S16-A
Z [auth H]40S ribosomal protein S17-B
AA [auth I]40S ribosomal protein S18-A
BA [auth J]40S ribosomal protein S19-A
CA [auth K]40S ribosomal protein S20
C [auth Q]40S ribosomal protein S1-A
DA [auth L]40S ribosomal protein S25-A
EA [auth M]40S ribosomal protein S29-A
FA [auth N]Ubiquitin-40S ribosomal protein S31
GA [auth O]Guanine nucleotide-binding protein subunit beta-like protein
HA [auth h]40S ribosomal protein S28-A
IA [auth z],
JA [auth y]
Eukaryotic translation initiation factor 3 subunit J
KA [auth x]Translation initiation factor RLI1
D [auth R]40S ribosomal protein S2
E [auth S]40S ribosomal protein S4-A
F [auth T]40S ribosomal protein S6-A
G [auth U]40S ribosomal protein S7-A
H [auth V]40S ribosomal protein S8-A
I [auth W]40S ribosomal protein S9-A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth X]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
J [auth X]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
J [auth X]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
J [auth X]IPR000266Small ribosomal subunit protein uS17Family
J [auth X]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
K [auth Y]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
K [auth Y]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
K [auth Y]IPR000589Small ribosomal subunit protein uS15Family
K [auth Y]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
L [auth Z]IPR001971Small ribosomal subunit protein uS11Family
L [auth Z]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
L [auth Z]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
M [auth a]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
M [auth a]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
M [auth a]IPR001931Small ribosomal subunit protein eS21Family
N [auth b]IPR000630Small ribosomal subunit protein uS8Family
N [auth b]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
N [auth b]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
O [auth c]IPR006032Small ribosomal subunit protein uS12Family
O [auth c]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
O [auth c]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
P [auth d]IPR001976Small ribosomal subunit protein eS24Family
P [auth d]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
P [auth d]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
Q [auth e]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
Q [auth e]IPR000892Small ribosomal subunit protein eS26Family
Q [auth e]IPR047864Ribosomal protein eS26, conserved siteConserved Site
R [auth f]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
R [auth f]IPR000592Small ribosomal subunit protein eS27Family
R [auth f]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
S [auth g]IPR006846Small ribosomal subunit protein eS30Family
B [auth P]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
B [auth P]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
B [auth P]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
B [auth P]IPR001865Small ribosomal subunit protein uS2Family
B [auth P]IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
T [auth E]IPR002222Small ribosomal subunit protein uS19Family
T [auth E]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
T [auth E]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
T [auth E]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
U [auth A]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
U [auth A]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
U [auth A]IPR004044K Homology domain, type 2Domain
U [auth A]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
U [auth A]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
U [auth A]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
U [auth A]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
V [auth B]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
V [auth B]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
V [auth B]IPR000235Small ribosomal subunit protein uS7Family
V [auth B]IPR023798Small ribosomal subunit protein uS7 domainDomain
V [auth B]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
W [auth C]IPR037447Small ribosomal subunit protein eS10Family
W [auth C]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
W [auth C]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
W [auth C]IPR005326Plectin/eS10, N-terminalDomain
X [auth D]IPR000530Small ribosomal subunit protein eS12Family
X [auth D]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
X [auth D]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
X [auth D]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
Y [auth F]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
Y [auth F]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
Y [auth F]IPR000754Small ribosomal subunit protein uS9Family
Y [auth F]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
Z [auth H]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
Z [auth H]IPR001210Small ribosomal subunit protein eS17Family
Z [auth H]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
AA [auth I]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
AA [auth I]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
AA [auth I]IPR001892Small ribosomal subunit protein uS13Family
AA [auth I]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
BA [auth J]IPR001266Small ribosomal subunit protein eS19Family
BA [auth J]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
BA [auth J]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
BA [auth J]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
CA [auth K]IPR001848Small ribosomal subunit protein uS10Family
CA [auth K]IPR027486Small ribosomal subunit protein uS10 domainDomain
CA [auth K]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
CA [auth K]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
CA [auth K]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
C [auth Q]IPR001593Small ribosomal subunit protein eS1Family
C [auth Q]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
C [auth Q]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
DA [auth L]IPR004977Small ribosomal subunit protein eS25Family
DA [auth L]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
EA [auth M]IPR001209Small ribosomal subunit protein uS14Family
EA [auth M]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
EA [auth M]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
EA [auth M]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
FA [auth N]IPR019954Ubiquitin conserved siteConserved Site
FA [auth N]IPR000626Ubiquitin-like domainDomain
FA [auth N]IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
FA [auth N]IPR002906Small ribosomal subunit protein eS31Domain
FA [auth N]IPR019956Ubiquitin domainDomain
FA [auth N]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
FA [auth N]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
GA [auth O]IPR019775WD40 repeat, conserved siteConserved Site
GA [auth O]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
GA [auth O]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
GA [auth O]IPR045223Small ribosomal subunit protein RACK1-likeFamily
GA [auth O]IPR001680WD40 repeatRepeat
GA [auth O]IPR020472G-protein beta WD-40 repeatRepeat
HA [auth h]IPR028626Ribosomal protein eS28 conserved siteConserved Site
HA [auth h]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
HA [auth h]IPR000289Small ribosomal subunit protein eS28Family
IA [auth z],
JA [auth y]
IPR013906Eukaryotic translation initiation factor 3 subunit JFamily
IA [auth z],
JA [auth y]
IPR023194Eukaryotic translation initiation factor 3-like domain superfamilyHomologous Superfamily
KA [auth x]IPR007209RNase L inhibitor RLI-like, possible metal-binding domainDomain
KA [auth x]IPR017871ABC transporter-like, conserved siteConserved Site
KA [auth x]IPR003439ABC transporter-like, ATP-binding domainDomain
KA [auth x]IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
KA [auth x]IPR003593AAA+ ATPase domainDomain
KA [auth x]IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
KA [auth x]IPR013283RLI1Family
KA [auth x]IPR034348RLI, domain 1Domain
KA [auth x]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
D [auth R]IPR000851Small ribosomal subunit protein uS5Family
D [auth R]IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
D [auth R]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
D [auth R]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
D [auth R]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
D [auth R]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
D [auth R]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
E [auth S]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
E [auth S]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
E [auth S]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
E [auth S]IPR002942RNA-binding S4 domainDomain
E [auth S]IPR013845Small ribosomal subunit protein eS4, central regionDomain
E [auth S]IPR000876Small ribosomal subunit protein eS4Family
E [auth S]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
E [auth S]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
E [auth S]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
E [auth S]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
E [auth S]IPR005824KOWDomain
F [auth T]IPR014401Small ribosomal subunit protein eS6-likeFamily
F [auth T]IPR001377Small ribosomal subunit protein eS6Family
F [auth T]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
G [auth U]IPR000554Small ribosomal subunit protein eS7Family
G [auth U]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
H [auth V]IPR001047Small ribosomal subunit protein eS8Family
H [auth V]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
H [auth V]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
H [auth V]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
I [auth W]IPR002942RNA-binding S4 domainDomain
I [auth W]IPR022801Small ribosomal subunit protein uS4Family
I [auth W]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
I [auth W]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
I [auth W]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
I [auth W]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily