6W1K

Crystal structure of the hydroxyglutarate synthase in complex with 2-oxoadipate from Oryza sativa

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF07063	e6w1kA1	A: a+b two layers	X: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology)	H: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology)	T: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	F: PF07063	ECOD (1.6)
B	PF07063	e6w1kB1	A: a+b two layers	X: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology)	H: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology)	T: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	F: PF07063	ECOD (1.6)
C	PF07063	e6w1kC1	A: a+b two layers	X: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology)	H: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology)	T: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	F: PF07063	ECOD (1.6)
D	PF07063	e6w1kD1	A: a+b two layers	X: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology)	H: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology)	T: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	F: PF07063	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF07063	Domain of unknown function (DUF1338), C-terminal (DUF1338)	Domain of unknown function (DUF1338), C-terminal	This domain is found at the C-terminal of a variety of bacterial, fungal and some plants proteins. This domain has been found in proteins involved in D-lysine metabolism, such as Swiss:Q88CC1 which catalyses a successive decarboxylation and intramole ...	This domain is found at the C-terminal of a variety of bacterial, fungal and some plants proteins. This domain has been found in proteins involved in D-lysine metabolism, such as Swiss:Q88CC1 which catalyses a successive decarboxylation and intramolecular hydroxylation of 2-oxoadipate forming 2-hydroxyglutarate in a Fe(II) and oxygen-dependent manner [1,2]. The structure of this domain has been solved (PDB:3iuz, PDB:6w1g].	Domain
A, B, C, D	PF21723	Domain of unknown function (DUF1338), N-terminal (DUF1338_N)	Domain of unknown function (DUF1338), N-terminal	This domain is found at the N-terminal of a variety of bacterial, fungal and some plants proteins. This domain has been found in proteins involved in D-lysine metabolism, such as Swiss:Q88CC1 which catalyses a successive decarboxylation and intramole ...	This domain is found at the N-terminal of a variety of bacterial, fungal and some plants proteins. This domain has been found in proteins involved in D-lysine metabolism, such as Swiss:Q88CC1 which catalyses a successive decarboxylation and intramolecular hydroxylation of 2-oxoadipate forming 2-hydroxyglutarate in a Fe(II) and oxygen-dependent manner [1,2]. The structure of this domain has been solved (PDB:3iuz, PBD:6w1g).	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Hydroxyglutarate synthase	oxidoreductase activity catalytic activity dioxygenase activity cation binding ion binding binding metal ion binding small molecule binding	-	membrane-bounded organelle intracellular organelle intracellular anatomical structure plastid organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle amyloplast chloroplast

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR009770	2-oxoadipate dioxygenase/decarboxylase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.