5ZQ4
PDE-Ubi-ADPr
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth C] | d5zq4c_ | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | Ubiquitin-related | Ubiquitin | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D | d5zq4d_ | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | Ubiquitin-related | Ubiquitin | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | SidE_2nd | e5zq4B1 | A: alpha complex topology | X: PDEase-like | H: HD-domain/PDEase-like (From Topology) | T: HD-domain/PDEase-like | F: SidE_2nd | ECOD (1.6) |
C [auth A] | SidE_2nd | e5zq4A1 | A: alpha complex topology | X: PDEase-like | H: HD-domain/PDEase-like (From Topology) | T: HD-domain/PDEase-like | F: SidE_2nd | ECOD (1.6) |
B [auth C] | ubiquitin_1 | e5zq4C1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
D | ubiquitin_1 | e5zq4D1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], C [auth A] | PF12252 | SidE phosphodiesterase (PDE) domain (SidE_PDE) | SidE phosphodiesterase (PDE) domain | This entry represents the phosphodiesterase (PDE) domain found in the bacterial ubiquitinating enzymes, which belong to the SidE family. This domain catalyses the conjugation of ADP-ribosylated ubiquitin (ADPR-Ub), previously synthesised by the mono- ... | Domain |
B [auth C], D | PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], C [auth A] | IPR043935 | SidE, mono-ADP-ribosyltransferase domain | Domain |
A [auth B], C [auth A] | IPR021014 | SidE, PDE domain | Domain |
A [auth B], C [auth A] | IPR043934 | SidE, DUB domain | Domain |
B [auth C], D | IPR019954 | Ubiquitin conserved site | Conserved Site |
B [auth C], D | IPR000626 | Ubiquitin-like domain | Domain |
B [auth C], D | IPR019956 | Ubiquitin domain | Domain |
B [auth C], D | IPR050158 | Ubiquitin and ubiquitin-like | Family |
B [auth C], D | IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily |