Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad5v4da1 Alpha and beta proteins (a+b) Bacillus chorismate mutase-like YjgF-like automated matches automated matches (Yersinia pestis ) [TaxId: 632 ], SCOPe (2.08)
Ad5v4da2 Artifacts Tags Tags Tags N-terminal Tags (Yersinia pestis ) [TaxId: 632 ], SCOPe (2.08)
Bd5v4db1 Alpha and beta proteins (a+b) Bacillus chorismate mutase-like YjgF-like automated matches automated matches (Yersinia pestis ) [TaxId: 632 ], SCOPe (2.08)
Bd5v4db2 Artifacts Tags Tags Tags N-terminal Tags (Yersinia pestis ) [TaxId: 632 ], SCOPe (2.08)
Ed5v4de1 Alpha and beta proteins (a+b) Bacillus chorismate mutase-like YjgF-like automated matches automated matches (Yersinia pestis ) [TaxId: 632 ], SCOPe (2.08)
Ed5v4de2 Artifacts Tags Tags Tags N-terminal Tags (Yersinia pestis ) [TaxId: 632 ], SCOPe (2.08)
Cd5v4dc1 Alpha and beta proteins (a+b) Bacillus chorismate mutase-like YjgF-like automated matches automated matches (Yersinia pestis ) [TaxId: 632 ], SCOPe (2.08)
Cd5v4dc2 Artifacts Tags Tags Tags N-terminal Tags (Yersinia pestis ) [TaxId: 632 ], SCOPe (2.08)
Dd5v4dd1 Alpha and beta proteins (a+b) Bacillus chorismate mutase-like YjgF-like automated matches automated matches (Yersinia pestis ) [TaxId: 632 ], SCOPe (2.08)
Dd5v4dd2 Artifacts Tags Tags Tags N-terminal Tags (Yersinia pestis ) [TaxId: 632 ], SCOPe (2.08)
Fd5v4df1 Alpha and beta proteins (a+b) Bacillus chorismate mutase-like YjgF-like automated matches automated matches (Yersinia pestis ) [TaxId: 632 ], SCOPe (2.08)
Fd5v4df2 Artifacts Tags Tags Tags N-terminal Tags (Yersinia pestis ) [TaxId: 632 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyYjgF/L-PSP8059826 4001510 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyYjgF-like8059827 3001733 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyYjgF-like8059827 3001733 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyYjgF-like8059827 3001733 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyYjgF-like8059827 3001733 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyYjgF-like8059827 3001733 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyYjgF-like8059827 3001733 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF01042e5v4dA1 A: a+b three layersX: Bacillus chorismate mutase-likeH: YjgF-like (From Topology)T: YjgF-likeF: PF01042ECOD (1.6)
BPF01042e5v4dB1 A: a+b three layersX: Bacillus chorismate mutase-likeH: YjgF-like (From Topology)T: YjgF-likeF: PF01042ECOD (1.6)
EPF01042e5v4dE1 A: a+b three layersX: Bacillus chorismate mutase-likeH: YjgF-like (From Topology)T: YjgF-likeF: PF01042ECOD (1.6)
CPF01042e5v4dC1 A: a+b three layersX: Bacillus chorismate mutase-likeH: YjgF-like (From Topology)T: YjgF-likeF: PF01042ECOD (1.6)
DPF01042e5v4dD1 A: a+b three layersX: Bacillus chorismate mutase-likeH: YjgF-like (From Topology)T: YjgF-likeF: PF01042ECOD (1.6)
FPF01042e5v4dF1 A: a+b three layersX: Bacillus chorismate mutase-likeH: YjgF-like (From Topology)T: YjgF-likeF: PF01042ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.1330.40 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: ACATH (4.3.0)
B3.30.1330.40 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: ACATH (4.3.0)
E3.30.1330.40 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: ACATH (4.3.0)
C3.30.1330.40 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: ACATH (4.3.0)
D3.30.1330.40 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: ACATH (4.3.0)
F3.30.1330.40 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: ACATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF01042Endoribonuclease L-PSP (Ribonuc_L-PSP)Endoribonuclease L-PSPEndoribonuclease active on single-stranded mRNA. Inhibits protein synthesis by cleavage of mRNA [1]. Previously thought to inhibit protein synthesis initiation [2]. This protein may also be involved in the regulation of purine biosynthesis [3]. Yjg ...Endoribonuclease active on single-stranded mRNA. Inhibits protein synthesis by cleavage of mRNA [1]. Previously thought to inhibit protein synthesis initiation [2]. This protein may also be involved in the regulation of purine biosynthesis [3]. YjgF (renamed RidA) family members are enamine/imine deaminases. They hydrolyze reactive intermediates released by PLP-dependent enzymes, including threonine dehydratase [5]. YjgF also prevents inhibition of transaminase B (IlvE) in Salmonella [4].
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR019897RidA, conserved siteConserved Site
A, B, C, D, E
IPR006056RidA familyFamily
A, B, C, D, E
IPR035959RutC-like superfamilyHomologous Superfamily
A, B, C, D, E
IPR006175YjgF/YER057c/UK114 familyFamily