5TSW
HIGH RESOLUTION CRYSTAL STRUCTURE OF A HUMAN TNF-ALPHA MUTANT
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5tswa_ | All beta proteins | TNF-like | TNF-like | TNF-like | Tumor necrosis factor (TNF) | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d5tswb_ | All beta proteins | TNF-like | TNF-like | TNF-like | Tumor necrosis factor (TNF) | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C | d5tswc_ | All beta proteins | TNF-like | TNF-like | TNF-like | Tumor necrosis factor (TNF) | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D | d5tswd_ | All beta proteins | TNF-like | TNF-like | TNF-like | Tumor necrosis factor (TNF) | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
E | d5tswe_ | All beta proteins | TNF-like | TNF-like | TNF-like | Tumor necrosis factor (TNF) | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
F | d5tswf_ | All beta proteins | TNF-like | TNF-like | TNF-like | Tumor necrosis factor (TNF) | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | TNF-like | 8041219 | 3000061 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | TNF-like | 8041219 | 3000061 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | TNF-like | 8041219 | 3000061 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | TNF-like | 8041219 | 3000061 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | TNF-like | 8041219 | 3000061 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | TNF-like | 8041219 | 3000061 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | TNF | e5tswA1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: TNF | ECOD (1.6) |
B | TNF | e5tswB1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: TNF | ECOD (1.6) |
C | TNF | e5tswC1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: TNF | ECOD (1.6) |
D | TNF | e5tswD1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: TNF | ECOD (1.6) |
E | TNF | e5tswE1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: TNF | ECOD (1.6) |
F | TNF | e5tswF1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: TNF | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
B | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
C | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
D | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
E | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
F | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
TNFA (Tumor necrosis factor Alpha) | TNF | Homo sapiens (human) | TNF*01 | R-LIKE-DOMAIN TNF (Pr77-233) | RPI | TNF | IMGT (202436-0) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR008983 | Tumour necrosis factor-like domain superfamily | Homologous Superfamily | |
IPR006053 | Tumour necrosis factor | Family | |
IPR002959 | Tumour necrosis factor alpha | Family | |
IPR021184 | Tumour necrosis factor, conserved site | Conserved Site | |
IPR006052 | Tumour necrosis factor domain | Domain |