5GAI
Probabilistic Structural Models of Mature P22 Bacteriophage Portal, Hub, and Tailspike proteins
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
K | SCOP2B Superfamily | YqbG/phage connector protein-like | 8104062 | 3001980 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | YqbG/phage connector protein-like | 8104062 | 3001980 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | YqbG/phage connector protein-like | 8104062 | 3001980 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | YqbG/phage connector protein-like | 8104062 | 3001980 | SCOP2B (2022-06-29) |
O | SCOP2B Superfamily | YqbG/phage connector protein-like | 8104062 | 3001980 | SCOP2B (2022-06-29) |
P | SCOP2B Superfamily | YqbG/phage connector protein-like | 8104062 | 3001980 | SCOP2B (2022-06-29) |
Q | SCOP2B Superfamily | YqbG/phage connector protein-like | 8104062 | 3001980 | SCOP2B (2022-06-29) |
R | SCOP2 Family | Phage P22 gp4-like | 8046846 | 4005325 | SCOP2 (2022-06-29) |
R | SCOP2 Superfamily | YqbG/phage connector protein-like | 8104062 | 3001980 | SCOP2 (2022-06-29) |
S | SCOP2B Superfamily | YqbG/phage connector protein-like | 8104062 | 3001980 | SCOP2B (2022-06-29) |
T | SCOP2B Superfamily | YqbG/phage connector protein-like | 8104062 | 3001980 | SCOP2B (2022-06-29) |
U | SCOP2B Superfamily | YqbG/phage connector protein-like | 8104062 | 3001980 | SCOP2B (2022-06-29) |
V | SCOP2B Superfamily | YqbG/phage connector protein-like | 8104062 | 3001980 | SCOP2B (2022-06-29) |
AA [auth 0] | SCOP2B Superfamily | Head-binding domain of phage P22 tailspike protein | 8043159 | 3002008 | SCOP2B (2022-06-29) |
AA [auth 0] | SCOP2B Superfamily | Pectin lyase-like | 8042982 | 3001746 | SCOP2B (2022-06-29) |
Y | SCOP2B Superfamily | Head-binding domain of phage P22 tailspike protein | 8043159 | 3002008 | SCOP2B (2022-06-29) |
Y | SCOP2B Superfamily | Pectin lyase-like | 8042982 | 3001746 | SCOP2B (2022-06-29) |
Z | SCOP2B Superfamily | Head-binding domain of phage P22 tailspike protein | 8043159 | 3002008 | SCOP2B (2022-06-29) |
Z | SCOP2B Superfamily | Pectin lyase-like | 8042982 | 3001746 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | P22_portal_2nd | e5gaiA2 | A: beta barrels | X: Barrel domain in upper collar protein (From Topology) | H: Barrel domain in upper collar protein (From Topology) | T: Barrel domain in upper collar protein | F: P22_portal_2nd | ECOD (1.6) |
A | P22_portal_1st | e5gaiA1 | A: alpha bundles | X: Alpha-helical domain in upper collar protein (From Topology) | H: Alpha-helical domain in upper collar protein (From Topology) | T: Alpha-helical domain in upper collar protein | F: P22_portal_1st | ECOD (1.6) |
B | P22_portal_2nd | e5gaiB2 | A: beta barrels | X: Barrel domain in upper collar protein (From Topology) | H: Barrel domain in upper collar protein (From Topology) | T: Barrel domain in upper collar protein | F: P22_portal_2nd | ECOD (1.6) |
B | P22_portal_1st | e5gaiB1 | A: alpha bundles | X: Alpha-helical domain in upper collar protein (From Topology) | H: Alpha-helical domain in upper collar protein (From Topology) | T: Alpha-helical domain in upper collar protein | F: P22_portal_1st | ECOD (1.6) |
C | P22_portal_2nd | e5gaiC1 | A: beta barrels | X: Barrel domain in upper collar protein (From Topology) | H: Barrel domain in upper collar protein (From Topology) | T: Barrel domain in upper collar protein | F: P22_portal_2nd | ECOD (1.6) |
C | P22_portal_1st | e5gaiC2 | A: alpha bundles | X: Alpha-helical domain in upper collar protein (From Topology) | H: Alpha-helical domain in upper collar protein (From Topology) | T: Alpha-helical domain in upper collar protein | F: P22_portal_1st | ECOD (1.6) |
D | P22_portal_2nd | e5gaiD2 | A: beta barrels | X: Barrel domain in upper collar protein (From Topology) | H: Barrel domain in upper collar protein (From Topology) | T: Barrel domain in upper collar protein | F: P22_portal_2nd | ECOD (1.6) |
D | P22_portal_1st | e5gaiD1 | A: alpha bundles | X: Alpha-helical domain in upper collar protein (From Topology) | H: Alpha-helical domain in upper collar protein (From Topology) | T: Alpha-helical domain in upper collar protein | F: P22_portal_1st | ECOD (1.6) |
E | P22_portal_2nd | e5gaiE2 | A: beta barrels | X: Barrel domain in upper collar protein (From Topology) | H: Barrel domain in upper collar protein (From Topology) | T: Barrel domain in upper collar protein | F: P22_portal_2nd | ECOD (1.6) |
E | P22_portal_1st | e5gaiE1 | A: alpha bundles | X: Alpha-helical domain in upper collar protein (From Topology) | H: Alpha-helical domain in upper collar protein (From Topology) | T: Alpha-helical domain in upper collar protein | F: P22_portal_1st | ECOD (1.6) |
F | P22_portal_2nd | e5gaiF1 | A: beta barrels | X: Barrel domain in upper collar protein (From Topology) | H: Barrel domain in upper collar protein (From Topology) | T: Barrel domain in upper collar protein | F: P22_portal_2nd | ECOD (1.6) |
F | P22_portal_1st | e5gaiF2 | A: alpha bundles | X: Alpha-helical domain in upper collar protein (From Topology) | H: Alpha-helical domain in upper collar protein (From Topology) | T: Alpha-helical domain in upper collar protein | F: P22_portal_1st | ECOD (1.6) |
G | P22_portal_2nd | e5gaiG2 | A: beta barrels | X: Barrel domain in upper collar protein (From Topology) | H: Barrel domain in upper collar protein (From Topology) | T: Barrel domain in upper collar protein | F: P22_portal_2nd | ECOD (1.6) |
G | P22_portal_1st | e5gaiG1 | A: alpha bundles | X: Alpha-helical domain in upper collar protein (From Topology) | H: Alpha-helical domain in upper collar protein (From Topology) | T: Alpha-helical domain in upper collar protein | F: P22_portal_1st | ECOD (1.6) |
H | P22_portal_2nd | e5gaiH1 | A: beta barrels | X: Barrel domain in upper collar protein (From Topology) | H: Barrel domain in upper collar protein (From Topology) | T: Barrel domain in upper collar protein | F: P22_portal_2nd | ECOD (1.6) |
H | P22_portal_1st | e5gaiH2 | A: alpha bundles | X: Alpha-helical domain in upper collar protein (From Topology) | H: Alpha-helical domain in upper collar protein (From Topology) | T: Alpha-helical domain in upper collar protein | F: P22_portal_1st | ECOD (1.6) |
I | P22_portal_2nd | e5gaiI2 | A: beta barrels | X: Barrel domain in upper collar protein (From Topology) | H: Barrel domain in upper collar protein (From Topology) | T: Barrel domain in upper collar protein | F: P22_portal_2nd | ECOD (1.6) |
I | P22_portal_1st | e5gaiI1 | A: alpha bundles | X: Alpha-helical domain in upper collar protein (From Topology) | H: Alpha-helical domain in upper collar protein (From Topology) | T: Alpha-helical domain in upper collar protein | F: P22_portal_1st | ECOD (1.6) |
J | P22_portal_2nd | e5gaiJ2 | A: beta barrels | X: Barrel domain in upper collar protein (From Topology) | H: Barrel domain in upper collar protein (From Topology) | T: Barrel domain in upper collar protein | F: P22_portal_2nd | ECOD (1.6) |
J | P22_portal_1st | e5gaiJ1 | A: alpha bundles | X: Alpha-helical domain in upper collar protein (From Topology) | H: Alpha-helical domain in upper collar protein (From Topology) | T: Alpha-helical domain in upper collar protein | F: P22_portal_1st | ECOD (1.6) |
W | P22_portal_2nd | e5gaiW2 | A: beta barrels | X: Barrel domain in upper collar protein (From Topology) | H: Barrel domain in upper collar protein (From Topology) | T: Barrel domain in upper collar protein | F: P22_portal_2nd | ECOD (1.6) |
W | P22_portal_1st | e5gaiW1 | A: alpha bundles | X: Alpha-helical domain in upper collar protein (From Topology) | H: Alpha-helical domain in upper collar protein (From Topology) | T: Alpha-helical domain in upper collar protein | F: P22_portal_1st | ECOD (1.6) |
X | P22_portal_2nd | e5gaiX2 | A: beta barrels | X: Barrel domain in upper collar protein (From Topology) | H: Barrel domain in upper collar protein (From Topology) | T: Barrel domain in upper collar protein | F: P22_portal_2nd | ECOD (1.6) |
X | P22_portal_1st | e5gaiX1 | A: alpha bundles | X: Alpha-helical domain in upper collar protein (From Topology) | H: Alpha-helical domain in upper collar protein (From Topology) | T: Alpha-helical domain in upper collar protein | F: P22_portal_1st | ECOD (1.6) |
K | P22_Tail-4 | e5gaiK1 | A: alpha arrays | X: Hypothetical protein YqbG-like (From Topology) | H: Hypothetical protein YqbG-like (From Topology) | T: Hypothetical protein YqbG-like | F: P22_Tail-4 | ECOD (1.6) |
L | P22_Tail-4 | e5gaiL1 | A: alpha arrays | X: Hypothetical protein YqbG-like (From Topology) | H: Hypothetical protein YqbG-like (From Topology) | T: Hypothetical protein YqbG-like | F: P22_Tail-4 | ECOD (1.6) |
M | P22_Tail-4 | e5gaiM1 | A: alpha arrays | X: Hypothetical protein YqbG-like (From Topology) | H: Hypothetical protein YqbG-like (From Topology) | T: Hypothetical protein YqbG-like | F: P22_Tail-4 | ECOD (1.6) |
N | P22_Tail-4 | e5gaiN1 | A: alpha arrays | X: Hypothetical protein YqbG-like (From Topology) | H: Hypothetical protein YqbG-like (From Topology) | T: Hypothetical protein YqbG-like | F: P22_Tail-4 | ECOD (1.6) |
O | P22_Tail-4 | e5gaiO1 | A: alpha arrays | X: Hypothetical protein YqbG-like (From Topology) | H: Hypothetical protein YqbG-like (From Topology) | T: Hypothetical protein YqbG-like | F: P22_Tail-4 | ECOD (1.6) |
P | P22_Tail-4 | e5gaiP1 | A: alpha arrays | X: Hypothetical protein YqbG-like (From Topology) | H: Hypothetical protein YqbG-like (From Topology) | T: Hypothetical protein YqbG-like | F: P22_Tail-4 | ECOD (1.6) |
Q | P22_Tail-4 | e5gaiQ1 | A: alpha arrays | X: Hypothetical protein YqbG-like (From Topology) | H: Hypothetical protein YqbG-like (From Topology) | T: Hypothetical protein YqbG-like | F: P22_Tail-4 | ECOD (1.6) |
R | P22_Tail-4 | e5gaiR1 | A: alpha arrays | X: Hypothetical protein YqbG-like (From Topology) | H: Hypothetical protein YqbG-like (From Topology) | T: Hypothetical protein YqbG-like | F: P22_Tail-4 | ECOD (1.6) |
S | P22_Tail-4 | e5gaiS1 | A: alpha arrays | X: Hypothetical protein YqbG-like (From Topology) | H: Hypothetical protein YqbG-like (From Topology) | T: Hypothetical protein YqbG-like | F: P22_Tail-4 | ECOD (1.6) |
T | P22_Tail-4 | e5gaiT1 | A: alpha arrays | X: Hypothetical protein YqbG-like (From Topology) | H: Hypothetical protein YqbG-like (From Topology) | T: Hypothetical protein YqbG-like | F: P22_Tail-4 | ECOD (1.6) |
U | P22_Tail-4 | e5gaiU1 | A: alpha arrays | X: Hypothetical protein YqbG-like (From Topology) | H: Hypothetical protein YqbG-like (From Topology) | T: Hypothetical protein YqbG-like | F: P22_Tail-4 | ECOD (1.6) |
V | P22_Tail-4 | e5gaiV1 | A: alpha arrays | X: Hypothetical protein YqbG-like (From Topology) | H: Hypothetical protein YqbG-like (From Topology) | T: Hypothetical protein YqbG-like | F: P22_Tail-4 | ECOD (1.6) |
AA [auth 0] | Head_binding | e5gai02 | A: beta sandwiches | X: Head-binding domain of phage P22 tailspike protein (From Topology) | H: Head-binding domain of phage P22 tailspike protein (From Topology) | T: Head-binding domain of phage P22 tailspike protein | F: Head_binding | ECOD (1.6) |
AA [auth 0] | PhageP22-tail_N | e5gai03 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Pectin lyase-like (From Topology) | T: Pectin lyase-like | F: PhageP22-tail_N | ECOD (1.6) |
AA [auth 0] | PhageP22-tail_C | e5gai01 | A: beta duplicates or obligate multimers | X: Phage tail fiber protein trimerization domain (From Topology) | H: Phage tail fiber protein trimerization domain (From Topology) | T: Phage tail fiber protein trimerization domain | F: PhageP22-tail_C | ECOD (1.6) |
Y | Head_binding | e5gaiY2 | A: beta sandwiches | X: Head-binding domain of phage P22 tailspike protein (From Topology) | H: Head-binding domain of phage P22 tailspike protein (From Topology) | T: Head-binding domain of phage P22 tailspike protein | F: Head_binding | ECOD (1.6) |
Y | PhageP22-tail_N | e5gaiY3 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Pectin lyase-like (From Topology) | T: Pectin lyase-like | F: PhageP22-tail_N | ECOD (1.6) |
Y | PhageP22-tail_C | e5gaiY1 | A: beta duplicates or obligate multimers | X: Phage tail fiber protein trimerization domain (From Topology) | H: Phage tail fiber protein trimerization domain (From Topology) | T: Phage tail fiber protein trimerization domain | F: PhageP22-tail_C | ECOD (1.6) |
Z | Head_binding | e5gaiZ1 | A: beta sandwiches | X: Head-binding domain of phage P22 tailspike protein (From Topology) | H: Head-binding domain of phage P22 tailspike protein (From Topology) | T: Head-binding domain of phage P22 tailspike protein | F: Head_binding | ECOD (1.6) |
Z | PhageP22-tail_N | e5gaiZ3 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Pectin lyase-like (From Topology) | T: Pectin lyase-like | F: PhageP22-tail_N | ECOD (1.6) |
Z | PhageP22-tail_C | e5gaiZ2 | A: beta duplicates or obligate multimers | X: Phage tail fiber protein trimerization domain (From Topology) | H: Phage tail fiber protein trimerization domain (From Topology) | T: Phage tail fiber protein trimerization domain | F: PhageP22-tail_C | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF16510 | Phage P22-like portal protein (P22_portal) | Phage P22-like portal protein | - | Family | |
PF11650 | P22 tail accessory factor (P22_Tail-4) | P22 tail accessory factor | - | Family | |
AA [auth 0], Y, Z | PF09251 | Salmonella phage P22 tail-spike (PhageP22-tail) | Salmonella phage P22 tail-spike | - | Repeat |
AA [auth 0], Y, Z | PF09008 | Head binding (Head_binding) | Head binding | The head binding domain found in the Phage P22 tailspike protein contains two regular beta-sheets, A and B, oriented nearly perpendicular to each other and composed of five and three strands respectively. The topology of the strands is exclusively an ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR032427 | Phage P22-like portal protein | Family | |
IPR038258 | Peptidoglycan hydrolase Gp4 superfamily | Homologous Superfamily | |
IPR020362 | Tail accessory factor GP4 | Family | |
AA [auth 0], Y, Z | IPR012332 | Autotransporter, pectate lyase C-like domain superfamily | Homologous Superfamily |
AA [auth 0], Y, Z | IPR015331 | P22 tailspike C-terminal domain | Domain |
AA [auth 0], Y, Z | IPR036730 | Phage P22 tailspike-like, N-terminal domain superfamily | Homologous Superfamily |
AA [auth 0], Y, Z | IPR009093 | Bacteriophage P22 tailspike, N-terminal | Domain |
AA [auth 0], Y, Z | IPR011050 | Pectin lyase fold/virulence factor | Homologous Superfamily |