5DCX
Structural studies of AAV2 Rep68 reveal a partially structured linker and compact domain conformation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Origin of replication-binding domain, RBD-like | 8089616 | 3001937 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Origin of replication-binding domain, RBD-like | 8089616 | 3001937 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Origin of replication-binding domain, RBD-like | 8089616 | 3001937 | SCOP2B (2022-06-29) |
D | SCOP2 Family | Replication protein Rep, nuclease domain | 8089615 | 4002726 | SCOP2 (2022-06-29) |
D | SCOP2 Superfamily | Origin of replication-binding domain, RBD-like | 8089616 | 3001937 | SCOP2 (2022-06-29) |
E | SCOP2B Superfamily | Origin of replication-binding domain, RBD-like | 8089616 | 3001937 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Origin of replication-binding domain, RBD-like | 8089616 | 3001937 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Origin of replication-binding domain, RBD-like | 8089616 | 3001937 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Origin of replication-binding domain, RBD-like | 8089616 | 3001937 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Origin of replication-binding domain, RBD-like | 8089616 | 3001937 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Origin of replication-binding domain, RBD-like | 8089616 | 3001937 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Origin of replication-binding domain, RBD-like | 8089616 | 3001937 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Rep_N | e5dcxA1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: Rep_N | ECOD (1.6) |
B | Rep_N | e5dcxB1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: Rep_N | ECOD (1.6) |
C | Rep_N | e5dcxC1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: Rep_N | ECOD (1.6) |
D | Rep_N | e5dcxD1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: Rep_N | ECOD (1.6) |
E | Rep_N | e5dcxE1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: Rep_N | ECOD (1.6) |
F | Rep_N | e5dcxF1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: Rep_N | ECOD (1.6) |
G | Rep_N | e5dcxG1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: Rep_N | ECOD (1.6) |
H | Rep_N | e5dcxH1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: Rep_N | ECOD (1.6) |
I | Rep_N | e5dcxI1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: Rep_N | ECOD (1.6) |
J | Rep_N | e5dcxJ1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: Rep_N | ECOD (1.6) |
K | Rep_N | e5dcxK1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: Rep_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08724 | Rep protein catalytic domain like (Rep_N) | Rep protein catalytic domain like | Adeno-associated virus (AAV) Replication (Rep) protein is essential for viral replication and integration. The catalytic domain has DNA binding and endonuclease activity. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR014835 | NS1 nuclease, NS1-Nuc domain, parvovirinae | Domain | |
IPR014015 | Helicase, superfamily 3, DNA virus | Domain | |
IPR049901 | NS1 nuclease, NS1-Nuc domain, Parvovirus | Domain | |
IPR001257 | Parvovirus non-structural protein 1, helicase domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |