5CHH
Crystal structure of transcriptional regulator CdpR from Pseudomonas aeruginosa
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | AraC type transcriptional activator | 8104124 | 4000332 | SCOP2 (2022-06-29) |
A | SCOP2 Family | PA2588-like | 8047722 | 4005784 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Homeodomain-like | 8104125 | 3000001 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Homeodomain-like | 8104126 | 3000001 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ligand-binding domain in the NO signalling and Golgi transport | 8104123 | 3001668 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e5chhA2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF12833 | e5chhA3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF12833 | ECOD (1.6) |
A | PF12625 | e5chhA1 | A: a+b complex topology | X: H-NOX domain (From Topology) | H: H-NOX domain (From Topology) | T: H-NOX domain | F: PF12625 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12625 | Arabinose-binding domain of AraC transcription regulator, N-term (Arabinose_bd) | Arabinose-binding domain of AraC transcription regulator, N-term | AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, Pfam:PF00165, and this dimerisation domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively reg ... | Domain | |
PF12833 | Helix-turn-helix domain (HTH_18) | Helix-turn-helix domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
AraC family transcriptional regulator |
| - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR032687 | HTH-type transcriptional regulator AraC-type, N-terminal | Domain | |
IPR018060 | DNA binding HTH domain, AraC-type | Domain | |
IPR009057 | Homeobox-like domain superfamily | Homologous Superfamily |