4L1U
Crystal Structure of Human Rtf1 Plus3 Domain in Complex with Spt5 CTR Phosphopeptide
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Plus3-like | 8033751 | 3000248 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Plus3-like | 8033751 | 3000248 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Plus3-like | 8033751 | 3000248 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Plus3-like | 8033751 | 3000248 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Plus3-like | 8033751 | 3000248 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Plus3-like | 8033751 | 3000248 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Plus-3 | e4l1uA1 | A: beta barrels | X: SH3 | H: Plus3 (From Topology) | T: Plus3 | F: Plus-3 | ECOD (1.6) |
B | Plus-3 | e4l1uB1 | A: beta barrels | X: SH3 | H: Plus3 (From Topology) | T: Plus3 | F: Plus-3 | ECOD (1.6) |
C | Plus-3 | e4l1uC1 | A: beta barrels | X: SH3 | H: Plus3 (From Topology) | T: Plus3 | F: Plus-3 | ECOD (1.6) |
D | Plus-3 | e4l1uD1 | A: beta barrels | X: SH3 | H: Plus3 (From Topology) | T: Plus3 | F: Plus-3 | ECOD (1.6) |
E | Plus-3 | e4l1uE1 | A: beta barrels | X: SH3 | H: Plus3 (From Topology) | T: Plus3 | F: Plus-3 | ECOD (1.6) |
F | Plus-3 | e4l1uF1 | A: beta barrels | X: SH3 | H: Plus3 (From Topology) | T: Plus3 | F: Plus-3 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.70.200 | Alpha Beta | Alpha-Beta Complex | Cathepsin B | Chain A | CATH (4.3.0) |
B | 3.90.70.200 | Alpha Beta | Alpha-Beta Complex | Cathepsin B | Chain A | CATH (4.3.0) |
C | 3.90.70.200 | Alpha Beta | Alpha-Beta Complex | Cathepsin B | Chain A | CATH (4.3.0) |
D | 3.90.70.200 | Alpha Beta | Alpha-Beta Complex | Cathepsin B | Chain A | CATH (4.3.0) |
E | 3.90.70.200 | Alpha Beta | Alpha-Beta Complex | Cathepsin B | Chain A | CATH (4.3.0) |
F | 3.90.70.200 | Alpha Beta | Alpha-Beta Complex | Cathepsin B | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03126 | Plus-3 domain (Plus-3) | Plus-3 domain | This domain is about 90 residues in length and is often found associated with the Pfam:PF02213 domain. The function of this domain is uncertain. It is possible that this domain is involved in DNA binding as it has three conserved positively charged ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036128 | Plus3-like superfamily | Homologous Superfamily | |
IPR004343 | Plus-3 domain | Domain | |
IPR041980 | Spt5, KOW domain repeat 6 | Domain | |
IPR041976 | Spt5, KOW domain repeat 3 | Domain | |
IPR039385 | NGN domain, eukaryotic | Domain | |
IPR014722 | Large ribosomal subunit protein uL2, domain 2 | Homologous Superfamily | |
IPR022581 | Spt5 transcription elongation factor, N-terminal | Domain | |
IPR024945 | Spt5 C-terminal domain | Domain | |
IPR006645 | NusG-like, N-terminal | Domain | |
IPR041975 | Spt5, KOW domain repeat 2 | Domain | |
IPR039659 | Transcription elongation factor SPT5 | Family | |
IPR036735 | NusG, N-terminal domain superfamily | Homologous Superfamily | |
IPR008991 | Translation protein SH3-like domain superfamily | Homologous Superfamily | |
IPR041973 | Spt5, KOW domain repeat 1 | Domain | |
IPR005100 | NGN domain | Domain | |
IPR041977 | Spt5, KOW domain repeat 4 | Domain | |
IPR017071 | Transcription elongation factor Spt5, eukaryote | Family | |
IPR005824 | KOW | Domain | |
IPR041978 | Spt5, KOW domain repeat 5 | Domain |