4G0D
Human collagenase 3 (MMP-13) full form with peptides from pro-domain
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Metalloproteases (zincins), catalytic domain | 8033902 | 3001975 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Hemopexin-like domain | 8042813 | 3001566 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Hemopexin-like domain | 8042813 | 3001566 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Metalloproteases (zincins), catalytic domain | 8033902 | 3001975 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Metalloproteases (zincins), catalytic domain | 8033902 | 3001975 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Hemopexin-like domain | 8042813 | 3001566 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Hemopexin-like domain | 8042813 | 3001566 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Metalloproteases (zincins), catalytic domain | 8033902 | 3001975 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Hemopexin | e4g0dA1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 4-bladed | F: Hemopexin | ECOD (1.6) |
A | Peptidase_M10 | e4g0dA2 | A: mixed a+b and a/b | X: Zincin-like | H: Metalloproteases (zincins) catalytic domain (From Topology) | T: Metalloproteases (zincins) catalytic domain | F: Peptidase_M10 | ECOD (1.6) |
B | Hemopexin | e4g0dB1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 4-bladed | F: Hemopexin | ECOD (1.6) |
B | Peptidase_M10 | e4g0dB2 | A: mixed a+b and a/b | X: Zincin-like | H: Metalloproteases (zincins) catalytic domain (From Topology) | T: Metalloproteases (zincins) catalytic domain | F: Peptidase_M10 | ECOD (1.6) |
C | Hemopexin | e4g0dC1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 4-bladed | F: Hemopexin | ECOD (1.6) |
C | Peptidase_M10 | e4g0dC2 | A: mixed a+b and a/b | X: Zincin-like | H: Metalloproteases (zincins) catalytic domain (From Topology) | T: Metalloproteases (zincins) catalytic domain | F: Peptidase_M10 | ECOD (1.6) |
D | Hemopexin | e4g0dD1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 4-bladed | F: Hemopexin | ECOD (1.6) |
D | Peptidase_M10 | e4g0dD2 | A: mixed a+b and a/b | X: Zincin-like | H: Metalloproteases (zincins) catalytic domain (From Topology) | T: Metalloproteases (zincins) catalytic domain | F: Peptidase_M10 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.390.10 | Alpha Beta | 3-Layer(aba) Sandwich | Collagenase (Catalytic Domain) | Collagenase (Catalytic Domain) | CATH (4.3.0) |
A | 2.110.10.10 | Mainly Beta | 4 Propeller | Hemopexin | Hemopexin-like domain | CATH (4.3.0) |
B | 3.40.390.10 | Alpha Beta | 3-Layer(aba) Sandwich | Collagenase (Catalytic Domain) | Collagenase (Catalytic Domain) | CATH (4.3.0) |
B | 2.110.10.10 | Mainly Beta | 4 Propeller | Hemopexin | Hemopexin-like domain | CATH (4.3.0) |
C | 3.40.390.10 | Alpha Beta | 3-Layer(aba) Sandwich | Collagenase (Catalytic Domain) | Collagenase (Catalytic Domain) | CATH (4.3.0) |
C | 2.110.10.10 | Mainly Beta | 4 Propeller | Hemopexin | Hemopexin-like domain | CATH (4.3.0) |
D | 3.40.390.10 | Alpha Beta | 3-Layer(aba) Sandwich | Collagenase (Catalytic Domain) | Collagenase (Catalytic Domain) | CATH (4.3.0) |
D | 2.110.10.10 | Mainly Beta | 4 Propeller | Hemopexin | Hemopexin-like domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00413 | Matrixin (Peptidase_M10) | Matrixin | The members of this family are enzymes that cleave peptides. These proteases require zinc for catalysis. | Domain | |
PF00045 | Hemopexin (Hemopexin) | Hemopexin | - | Repeat | |
E [auth W], F [auth X], G [auth Y], H [auth Z] | PF01471 | Putative peptidoglycan binding domain (PG_binding_1) | Putative peptidoglycan binding domain | This domain is composed of three alpha helices [1]. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [2]. This domain may have a general peptidoglycan binding function. This family is ... | Domain |