4FVL
Human collagenase 3 (MMP-13) full form with peptides from pro-domain
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4fvla2 | All beta proteins | 4-bladed beta-propeller | Hemopexin-like domain | automated matches | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A | d4fvla1 | Alpha and beta proteins (a+b) | Zincin-like | Metalloproteases ('zincins'), catalytic domain | Matrix metalloproteases, catalytic domain | Collagenase-3 (MMP-13) | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d4fvlb2 | All beta proteins | 4-bladed beta-propeller | Hemopexin-like domain | automated matches | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d4fvlb1 | Alpha and beta proteins (a+b) | Zincin-like | Metalloproteases ('zincins'), catalytic domain | Matrix metalloproteases, catalytic domain | Collagenase-3 (MMP-13) | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Metalloproteases (zincins), catalytic domain | 8033902 | 3001975 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Hemopexin-like domain | 8042813 | 3001566 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Metalloproteases (zincins), catalytic domain | 8033902 | 3001975 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Hemopexin-like domain | 8042813 | 3001566 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Hemopexin | e4fvlA1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 4-bladed | F: Hemopexin | ECOD (1.6) |
A | Peptidase_M10 | e4fvlA2 | A: mixed a+b and a/b | X: Zincin-like | H: Metalloproteases (zincins) catalytic domain (From Topology) | T: Metalloproteases (zincins) catalytic domain | F: Peptidase_M10 | ECOD (1.6) |
B | Hemopexin | e4fvlB1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 4-bladed | F: Hemopexin | ECOD (1.6) |
B | Peptidase_M10 | e4fvlB2 | A: mixed a+b and a/b | X: Zincin-like | H: Metalloproteases (zincins) catalytic domain (From Topology) | T: Metalloproteases (zincins) catalytic domain | F: Peptidase_M10 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.390.10 | Alpha Beta | 3-Layer(aba) Sandwich | Collagenase (Catalytic Domain) | Collagenase (Catalytic Domain) | CATH (4.3.0) |
A | 2.110.10.10 | Mainly Beta | 4 Propeller | Hemopexin | Hemopexin-like domain | CATH (4.3.0) |
B | 3.40.390.10 | Alpha Beta | 3-Layer(aba) Sandwich | Collagenase (Catalytic Domain) | Collagenase (Catalytic Domain) | CATH (4.3.0) |
B | 2.110.10.10 | Mainly Beta | 4 Propeller | Hemopexin | Hemopexin-like domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00413 | Matrixin (Peptidase_M10) | Matrixin | The members of this family are enzymes that cleave peptides. These proteases require zinc for catalysis. | Domain | |
PF00045 | Hemopexin (Hemopexin) | Hemopexin | - | Repeat | |
PF01471 | Putative peptidoglycan binding domain (PG_binding_1) | Putative peptidoglycan binding domain | This domain is composed of three alpha helices [1]. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [2]. This domain may have a general peptidoglycan binding function. This family is ... | Domain |