3MMG

Crystal structure of tobacco vein mottling virus protease

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3mmga_	All beta proteins	Trypsin-like serine proteases	Trypsin-like serine proteases	automated matches	automated matches	TVMV (Tobacco vein mottling virus ) [TaxId: 12228 ],	SCOPe (2.08)
B	d3mmgb_	All beta proteins	Trypsin-like serine proteases	Trypsin-like serine proteases	automated matches	automated matches	TVMV (Tobacco vein mottling virus ) [TaxId: 12228 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Viral capsid proteases-like	8072084	4002263	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Trypsin-like serine proteases	8072085	3000114	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Trypsin-like serine proteases	8072085	3000114	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Peptidase_C4	e3mmgA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Peptidase_C4	ECOD (1.6)
B	Peptidase_C4	e3mmgB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Peptidase_C4	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.10.10	Mainly Beta	Beta Barrel	Thrombin, subunit H	Trypsin-like serine proteases	CATH (4.3.0)
B	2.40.10.10	Mainly Beta	Beta Barrel	Thrombin, subunit H	Trypsin-like serine proteases	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00863	Peptidase family C4 (Peptidase_C4)	Peptidase family C4	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Nuclear inclusion protein A	catalytic activity, acting on a nucleic acid helicase activity catalytic activity ATP-dependent activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA RNA polymerase activity transferase activity RNA-dependent RNA polymerase activity nucleotidyltransferase activity transferase activity, transferring phosphorus-containing groups cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein catalytic activity, acting on a nucleic acid helicase activity catalytic activity ATP-dependent activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA RNA polymerase activity transferase activity RNA-dependent RNA polymerase activity nucleotidyltransferase activity transferase activity, transferring phosphorus-containing groups cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein cysteine-type endopeptidase activity hydrolase activity endopeptidase activity serine hydrolase activity serine-type peptidase activity RNA binding binding organic cyclic compound binding nucleic acid binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity, acting on acid anhydrides structural molecule activity	cellular biosynthetic process cellular metabolic process RNA metabolic process viral life cycle primary metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process nucleic acid biosynthetic process organic substance metabolic process viral genome replication biosynthetic process cellular biosynthetic process cellular metabolic process RNA metabolic process viral life cycle primary metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process nucleic acid biosynthetic process organic substance metabolic process viral genome replication biosynthetic process viral RNA genome replication organic cyclic compound biosynthetic process viral process organic substance biosynthetic process metabolic process cellular process macromolecule metabolic process gene expression DNA-templated transcription organonitrogen compound metabolic process proteolysis protein metabolic process	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle viral capsid virion component helical viral capsid host cell cytoplasmic vesicle host cell cytoplasm host cell cytoplasm part
C, D	Nuclear inclusion protein B fragment	catalytic activity, acting on a nucleic acid helicase activity catalytic activity ATP-dependent activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA RNA polymerase activity transferase activity RNA-dependent RNA polymerase activity nucleotidyltransferase activity transferase activity, transferring phosphorus-containing groups cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein catalytic activity, acting on a nucleic acid helicase activity catalytic activity ATP-dependent activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA RNA polymerase activity transferase activity RNA-dependent RNA polymerase activity nucleotidyltransferase activity transferase activity, transferring phosphorus-containing groups cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein cysteine-type endopeptidase activity hydrolase activity endopeptidase activity serine hydrolase activity serine-type peptidase activity RNA binding binding organic cyclic compound binding nucleic acid binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity, acting on acid anhydrides structural molecule activity	cellular biosynthetic process cellular metabolic process RNA metabolic process viral life cycle primary metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process nucleic acid biosynthetic process organic substance metabolic process viral genome replication biosynthetic process cellular biosynthetic process cellular metabolic process RNA metabolic process viral life cycle primary metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process nucleic acid biosynthetic process organic substance metabolic process viral genome replication biosynthetic process viral RNA genome replication organic cyclic compound biosynthetic process viral process organic substance biosynthetic process metabolic process cellular process macromolecule metabolic process gene expression DNA-templated transcription organonitrogen compound metabolic process proteolysis protein metabolic process	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle viral capsid virion component helical viral capsid host cell cytoplasmic vesicle host cell cytoplasm host cell cytoplasm part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR001205	RNA-directed RNA polymerase, C-terminal domain	Domain
A, B	IPR001456	Helper component proteinase	Family
A, B	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	Homologous Superfamily
A, B	IPR002540	Peptidase S30, polyprotein P1, potyvirus	Domain
A, B	IPR013648	Polyprotein, Potyviridae	Domain
A, B	IPR001730	Potyvirus NIa protease (NIa-pro) domain	Domain
A, B	IPR011545	DEAD/DEAH box helicase domain	Domain
A, B	IPR031159	Helper-component proteinase (HC-Pro) cysteine protease (CPD) domain	Domain
A, B	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
A, B	IPR001650	Helicase, C-terminal domain-like	Domain
A, B	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily
A, B	IPR014001	Helicase superfamily 1/2, ATP-binding domain	Domain
A, B	IPR001592	Potyvirus coat protein	Family
A, B	IPR039560	Potyviral polyprotein protein 3	Domain
A, B	IPR043504	Peptidase S1, PA clan, chymotrypsin-like fold	Homologous Superfamily
A, B	IPR007094	RNA-directed RNA polymerase, catalytic domain	Domain
A, B	IPR042308	Helper-component proteinase (HC-Pro) cysteine protease (CPD) domain superfamily	Homologous Superfamily
C, D	IPR001205	RNA-directed RNA polymerase, C-terminal domain	Domain
C, D	IPR001456	Helper component proteinase	Family
C, D	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	Homologous Superfamily
C, D	IPR002540	Peptidase S30, polyprotein P1, potyvirus	Domain
C, D	IPR013648	Polyprotein, Potyviridae	Domain
C, D	IPR001730	Potyvirus NIa protease (NIa-pro) domain	Domain
C, D	IPR011545	DEAD/DEAH box helicase domain	Domain
C, D	IPR031159	Helper-component proteinase (HC-Pro) cysteine protease (CPD) domain	Domain
C, D	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
C, D	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
C, D	IPR001650	Helicase, C-terminal domain-like	Domain
C, D	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily
C, D	IPR014001	Helicase superfamily 1/2, ATP-binding domain	Domain
C, D	IPR001592	Potyvirus coat protein	Family
C, D	IPR039560	Potyviral polyprotein protein 3	Domain
C, D	IPR043504	Peptidase S1, PA clan, chymotrypsin-like fold	Homologous Superfamily
C, D	IPR007094	RNA-directed RNA polymerase, catalytic domain	Domain
C, D	IPR042308	Helper-component proteinase (HC-Pro) cysteine protease (CPD) domain superfamily	Homologous Superfamily