3CF5
Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth 1] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8038526 | 3001320 | SCOP2B (2022-06-29) |
C [auth 3] | SCOP2B Superfamily | L35p-like | 8038530 | 3000790 | SCOP2B (2022-06-29) |
D [auth 4] | SCOP2B Superfamily | Ribosomal protein L36 | 8038532 | 3001346 | SCOP2B (2022-06-29) |
F [auth A] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8038534 | 3000334 | SCOP2B (2022-06-29) |
F [auth A] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8038538 | 3000135 | SCOP2B (2022-06-29) |
G [auth B] | SCOP2B Superfamily | Translational proteins | 8038543 | 3000811 | SCOP2B (2022-06-29) |
H [auth C] | SCOP2B Superfamily | Ribosomal protein L4 | 8038546 | 3001146 | SCOP2B (2022-06-29) |
I [auth D] | SCOP2B Superfamily | RL5-like | 8038549 | 3001709 | SCOP2B (2022-06-29) |
J [auth E] | SCOP2B Superfamily | Ribosomal protein L6 | 8038552 | 3000724 | SCOP2B (2022-06-29) |
J [auth E] | SCOP2B Superfamily | Ribosomal protein L6 | 8038556 | 3000724 | SCOP2B (2022-06-29) |
K [auth F] | SCOP2B Superfamily | Ribosomal protein L11 C-terminal domain | 8033402 | 3001186 | SCOP2B (2022-06-29) |
K [auth F] | SCOP2B Superfamily | Ribosomal L11/L12e N-terminal domain-like | 8033405 | 3000950 | SCOP2B (2022-06-29) |
L [auth G] | SCOP2B Superfamily | Ribosomal protein L13 | 8038555 | 3001134 | SCOP2B (2022-06-29) |
M [auth H] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8038558 | 3000433 | SCOP2B (2022-06-29) |
N [auth I] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8038561 | 3001045 | SCOP2B (2022-06-29) |
O [auth J] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8038562 | 3000884 | SCOP2B (2022-06-29) |
P [auth K] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8038564 | 3000995 | SCOP2B (2022-06-29) |
Q [auth L] | SCOP2B Superfamily | Translational machinery components | 8038566 | 3000571 | SCOP2B (2022-06-29) |
R [auth M] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8038569 | 3000334 | SCOP2B (2022-06-29) |
S [auth N] | SCOP2B Superfamily | Ribosomal protein L20 | 8038571 | 3000563 | SCOP2B (2022-06-29) |
T [auth O] | SCOP2B Superfamily | l21p-like | 8038572 | 3002005 | SCOP2B (2022-06-29) |
U [auth P] | SCOP2B Superfamily | Ribosomal protein L22 | 8038576 | 3001078 | SCOP2B (2022-06-29) |
V [auth Q] | SCOP2B Superfamily | Ribosomal proteins S24e L23 and L15e | 8038577 | 3000210 | SCOP2B (2022-06-29) |
W [auth R] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8038578 | 3000334 | SCOP2B (2022-06-29) |
X [auth S] | SCOP2B Superfamily | Ribosomal protein L25-like | 8038580 | 3001161 | SCOP2B (2022-06-29) |
Y [auth T] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8038582 | 3000539 | SCOP2B (2022-06-29) |
Z [auth U] | SCOP2B Superfamily | L28p-like | 8038585 | 3001966 | SCOP2B (2022-06-29) |
AA [auth V] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8038586 | 3000713 | SCOP2B (2022-06-29) |
BA [auth W] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8038590 | 3001378 | SCOP2B (2022-06-29) |
DA [auth Y] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8038593 | 3001320 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth 1] | PF00471 | e3cf511 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF00471 | ECOD (1.6) |
B [auth 2] | PF00468 | e3cf521 | A: extended segments | X: 50S ribosomal protein L34 (From Topology) | H: 50S ribosomal protein L34 (From Topology) | T: 50S ribosomal protein L34 | F: PF00468 | ECOD (1.6) |
C [auth 3] | PF01632 | e3cf531 | A: a+b two layers | X: Ribosomal protein L35p (From Topology) | H: Ribosomal protein L35p (From Topology) | T: Ribosomal protein L35p | F: PF01632 | ECOD (1.6) |
D [auth 4] | PF00444 | e3cf541 | A: few secondary structure elements | X: Ribosomal protein L36 (From Topology) | H: Ribosomal protein L36 (From Topology) | T: Ribosomal protein L36 | F: PF00444 | ECOD (1.6) |
F [auth A] | PF00181 | e3cf5A1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00181 | ECOD (1.6) |
F [auth A] | PF03947 | e3cf5A2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF03947 | ECOD (1.6) |
G [auth B] | PF00297 | e3cf5B1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF00297 | ECOD (1.6) |
H [auth C] | PF00573 | e3cf5C1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: PF00573 | ECOD (1.6) |
I [auth D] | PF00281,PF00673 | e3cf5D1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: PF00281,PF00673 | ECOD (1.6) |
J [auth E] | PF00347 | e3cf5E1 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: PF00347 | ECOD (1.6) |
K [auth F] | PF00298 | e3cf5F1 | A: alpha arrays | X: HTH | H: HTH | T: Ribosomal protein L11, C-terminal domain | F: PF00298 | ECOD (1.6) |
K [auth F] | PF03946 | e3cf5F2 | A: a+b two layers | X: Ribosomal protein L11/L12e N-terminal domain-like | H: Ribosomal protein L11/L12e N-terminal domain (From Topology) | T: Ribosomal protein L11/L12e N-terminal domain | F: PF03946 | ECOD (1.6) |
L [auth G] | PF00572 | e3cf5G1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: PF00572 | ECOD (1.6) |
M [auth H] | PF00238 | e3cf5H1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: PF00238 | ECOD (1.6) |
N [auth I] | PF00828 | e3cf5I1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: PF00828 | ECOD (1.6) |
O [auth J] | PF00252 | e3cf5J1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: PF00252 | ECOD (1.6) |
P [auth K] | PF01196 | e3cf5K1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Prokaryotic ribosomal protein L17 (From Topology) | T: Prokaryotic ribosomal protein L17 | F: PF01196 | ECOD (1.6) |
Q [auth L] | PF00861 | e3cf5L1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00861 | ECOD (1.6) |
R [auth M] | PF01245 | e3cf5M1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01245 | ECOD (1.6) |
S [auth N] | PF00453 | e3cf5N1 | A: alpha arrays | X: PABP domain-like | H: Ribosomal protein L20 (From Topology) | T: Ribosomal protein L20 | F: PF00453 | ECOD (1.6) |
T [auth O] | PF00829 | e3cf5O1 | A: beta barrels | X: Ribosomal protein L21p (From Topology) | H: Ribosomal protein L21p (From Topology) | T: Ribosomal protein L21p | F: PF00829 | ECOD (1.6) |
U [auth P] | PF00237 | e3cf5P1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: PF00237 | ECOD (1.6) |
V [auth Q] | PF00276 | e3cf5Q1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF00276 | ECOD (1.6) |
W [auth R] | PF00467,PF17136 | e3cf5R2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00467,PF17136 | ECOD (1.6) |
X [auth S] | PF01386 | e3cf5S1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: PF01386 | ECOD (1.6) |
X [auth S] | PF14693 | e3cf5S2 | A: a+b complex topology | X: Ribosomal protein TL5/L25 C-terminal domain-like | H: Ribosomal protein TL5/L25 C-terminal domain-related (From Topology) | T: Ribosomal protein TL5/L25 C-terminal domain-related | F: PF14693 | ECOD (1.6) |
Y [auth T] | PF01016 | e3cf5T1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: PF01016 | ECOD (1.6) |
Z [auth U] | PF00830 | e3cf5U1 | A: few secondary structure elements | X: Ribosomal protein bL28-related (From Homology) | H: Ribosomal protein bL28-related | T: Ribosomal protein L28 | F: PF00830 | ECOD (1.6) |
AA [auth V] | PF00831 | e3cf5V1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: PF00831 | ECOD (1.6) |
BA [auth W] | PF00327 | e3cf5W1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: PF00327 | ECOD (1.6) |
DA [auth Y] | PF01783 | e3cf5Y1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01783 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
E [auth 5] | BB9 | Parent Component: CYS :  AA0241 , AA0242 , AA0243 , AA0244 , AA0466 , AA0467 , AA0485 , AA0541 :  glycine thiazole-4-carboxylic acid MOD:00246 , L-serine thiazole-4-carboxylic acid MOD:00247 , L-phenylalanine thiazole-4-carboxylic acid MOD:00248 , L-cysteine thiazole-4-carboxylic acid MOD:00249 , L-isoleucine thiazole-4-carboxylic acid MOD:01389 , L-valine thiazole-4-carboxylic acid MOD:01390 , L-threonine thiazoline-4-carboxylic acid MOD:01408 , L-glutamate thiazole-4-carboxylic acid MOD:01815 |
E [auth 5] | DBU | Parent Component: THR :  AA0241 , AA0242 , AA0243 , AA0244 , AA0466 , AA0467 , AA0485 , AA0541 , AA0182 :  glycine thiazole-4-carboxylic acid MOD:00246 , L-serine thiazole-4-carboxylic acid MOD:00247 , L-phenylalanine thiazole-4-carboxylic acid MOD:00248 , L-cysteine thiazole-4-carboxylic acid MOD:00249 , L-isoleucine thiazole-4-carboxylic acid MOD:01389 , L-valine thiazole-4-carboxylic acid MOD:01390 , L-threonine thiazoline-4-carboxylic acid MOD:01408 , L-glutamate thiazole-4-carboxylic acid MOD:01815 , dehydrobutyrine (Thr) MOD:00190 , (Z)-dehydrobutyrine (Thr) MOD:01471 |
E [auth 5] | DCY | AA0241 , AA0242 , AA0243 , AA0244 , AA0466 , AA0467 , AA0485 , AA0541 , AA0182 | : 
E [auth 5] | DHA | Parent Component: SER :  AA0241 , AA0242 , AA0243 , AA0244 , AA0466 , AA0467 , AA0485 , AA0541 , AA0182 , AA0181 :  glycine thiazole-4-carboxylic acid MOD:00246 , L-serine thiazole-4-carboxylic acid MOD:00247 , L-phenylalanine thiazole-4-carboxylic acid MOD:00248 , L-cysteine thiazole-4-carboxylic acid MOD:00249 , L-isoleucine thiazole-4-carboxylic acid MOD:01389 , L-valine thiazole-4-carboxylic acid MOD:01390 , L-threonine thiazoline-4-carboxylic acid MOD:01408 , L-glutamate thiazole-4-carboxylic acid MOD:01815 , dehydrobutyrine (Thr) MOD:00190 , (Z)-dehydrobutyrine (Thr) MOD:01471 , dehydroalanine (Ser) MOD:00189 , dehydroalanine (Cys) MOD:00793 , dehydroalanine (Tyr) MOD:00824 , dehydroalanine MOD:01168 , dehydroalanine (Sec) MOD:01954 |
E [auth 5] | MH6 | Parent Component: SER :  AA0241 , AA0242 , AA0243 , AA0244 , AA0466 , AA0467 , AA0485 , AA0541 , AA0182 , AA0181 , AA0540 :  glycine thiazole-4-carboxylic acid MOD:00246 , L-serine thiazole-4-carboxylic acid MOD:00247 , L-phenylalanine thiazole-4-carboxylic acid MOD:00248 , L-cysteine thiazole-4-carboxylic acid MOD:00249 , L-isoleucine thiazole-4-carboxylic acid MOD:01389 , L-valine thiazole-4-carboxylic acid MOD:01390 , L-threonine thiazoline-4-carboxylic acid MOD:01408 , L-glutamate thiazole-4-carboxylic acid MOD:01815 , dehydrobutyrine (Thr) MOD:00190 , (Z)-dehydrobutyrine (Thr) MOD:01471 , dehydroalanine (Ser) MOD:00189 , dehydroalanine (Cys) MOD:00793 , dehydroalanine (Tyr) MOD:00824 , dehydroalanine MOD:01168 , dehydroalanine (Sec) MOD:01954 , L-cysteine 3-hydroxy-2,5-pyridinedicarboxylic acid MOD:01814 |
E [auth 5] | NH2 | AA0241 , AA0242 , AA0243 , AA0244 , AA0466 , AA0467 , AA0485 , AA0541 , AA0182 , AA0181 , AA0540 , AA0081 , AA0083 , AA0084 , AA0086 , AA0087 , AA0088 , AA0090 , AA0091 , AA0092 , AA0093 , AA0095 , AA0096 , AA0097 , AA0098 , AA0099 , AA0100 :  glycine thiazole-4-carboxylic acid MOD:00246 , L-serine thiazole-4-carboxylic acid MOD:00247 , L-phenylalanine thiazole-4-carboxylic acid MOD:00248 , L-cysteine thiazole-4-carboxylic acid MOD:00249 , L-isoleucine thiazole-4-carboxylic acid MOD:01389 , L-valine thiazole-4-carboxylic acid MOD:01390 , L-threonine thiazoline-4-carboxylic acid MOD:01408 , L-glutamate thiazole-4-carboxylic acid MOD:01815 , dehydrobutyrine (Thr) MOD:00190 , (Z)-dehydrobutyrine (Thr) MOD:01471 , dehydroalanine (Ser) MOD:00189 , dehydroalanine (Cys) MOD:00793 , dehydroalanine (Tyr) MOD:00824 , dehydroalanine MOD:01168 , dehydroalanine (Sec) MOD:01954 , L-cysteine 3-hydroxy-2,5-pyridinedicarboxylic acid MOD:01814 , L-alanine amide MOD:00090 , L-asparagine amide MOD:00092 , L-aspartic acid 1-amide MOD:00093 , L-glutamine amide MOD:00095 , L-glutamic acid 1-amide MOD:00096 , glycine amide MOD:00097 , L-isoleucine amide MOD:00099 , L-leucine amide MOD:00100 , L-lysine amide MOD:00101 , L-methionine amide MOD:00102 , L-proline amide MOD:00104 , L-serine amide MOD:00105 , L-threonine amide MOD:00106 , L-tryptophan amide MOD:00107 , L-tyrosine amide MOD:00108 , L-valine amide MOD:00109 | : 
E [auth 5] | QUA | AA0241 , AA0242 , AA0243 , AA0244 , AA0466 , AA0467 , AA0485 , AA0541 , AA0182 , AA0181 , AA0540 , AA0081 , AA0083 , AA0084 , AA0086 , AA0087 , AA0088 , AA0090 , AA0091 , AA0092 , AA0093 , AA0095 , AA0096 , AA0097 , AA0098 , AA0099 , AA0100 , AA0472 :  glycine thiazole-4-carboxylic acid MOD:00246 , L-serine thiazole-4-carboxylic acid MOD:00247 , L-phenylalanine thiazole-4-carboxylic acid MOD:00248 , L-cysteine thiazole-4-carboxylic acid MOD:00249 , L-isoleucine thiazole-4-carboxylic acid MOD:01389 , L-valine thiazole-4-carboxylic acid MOD:01390 , L-threonine thiazoline-4-carboxylic acid MOD:01408 , L-glutamate thiazole-4-carboxylic acid MOD:01815 , dehydrobutyrine (Thr) MOD:00190 , (Z)-dehydrobutyrine (Thr) MOD:01471 , dehydroalanine (Ser) MOD:00189 , dehydroalanine (Cys) MOD:00793 , dehydroalanine (Tyr) MOD:00824 , dehydroalanine MOD:01168 , dehydroalanine (Sec) MOD:01954 , L-cysteine 3-hydroxy-2,5-pyridinedicarboxylic acid MOD:01814 , L-alanine amide MOD:00090 , L-asparagine amide MOD:00092 , L-aspartic acid 1-amide MOD:00093 , L-glutamine amide MOD:00095 , L-glutamic acid 1-amide MOD:00096 , glycine amide MOD:00097 , L-isoleucine amide MOD:00099 , L-leucine amide MOD:00100 , L-lysine amide MOD:00101 , L-methionine amide MOD:00102 , L-proline amide MOD:00104 , L-serine amide MOD:00105 , L-threonine amide MOD:00106 , L-tryptophan amide MOD:00107 , L-tyrosine amide MOD:00108 , L-valine amide MOD:00109 , 4-(1-hydroxyethyl)-7-isoleucino-2-(threonin-O3-ylcarbonyl)-7,8-dihydroquinolin-8-ol MOD:01395 | : 
E [auth 5] | TS9 | Parent Component: ILE :  AA0241 , AA0242 , AA0243 , AA0244 , AA0466 , AA0467 , AA0485 , AA0541 , AA0182 , AA0181 , AA0540 , AA0081 , AA0083 , AA0084 , AA0086 , AA0087 , AA0088 , AA0090 , AA0091 , AA0092 , AA0093 , AA0095 , AA0096 , AA0097 , AA0098 , AA0099 , AA0100 , AA0472 |