3ALQ
Crystal structure of TNF-TNFR2 complex
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3alqa_ | All beta proteins | TNF-like | TNF-like | TNF-like | Tumor necrosis factor (TNF) | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d3alqb_ | All beta proteins | TNF-like | TNF-like | TNF-like | Tumor necrosis factor (TNF) | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C | d3alqc_ | All beta proteins | TNF-like | TNF-like | TNF-like | Tumor necrosis factor (TNF) | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D | d3alqd_ | All beta proteins | TNF-like | TNF-like | TNF-like | Tumor necrosis factor (TNF) | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
E | d3alqe_ | All beta proteins | TNF-like | TNF-like | TNF-like | Tumor necrosis factor (TNF) | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
F | d3alqf_ | All beta proteins | TNF-like | TNF-like | TNF-like | Tumor necrosis factor (TNF) | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | TNF-like | 8041219 | 3000061 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | TNF-like | 8041219 | 3000061 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | TNF-like | 8041219 | 3000061 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | TNF-like | 8041219 | 3000061 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | TNF-like | 8041219 | 3000061 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | TNF-like | 8041219 | 3000061 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00229 | e3alqA1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: PF00229 | ECOD (1.6) |
B | PF00229 | e3alqB1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: PF00229 | ECOD (1.6) |
C | PF00229 | e3alqC1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: PF00229 | ECOD (1.6) |
D | PF00229 | e3alqD1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: PF00229 | ECOD (1.6) |
E | PF00229 | e3alqE1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: PF00229 | ECOD (1.6) |
F | PF00229 | e3alqF1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: PF00229 | ECOD (1.6) |
G [auth R] | F_UNCLASSIFIED | e3alqR1 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: F_UNCLASSIFIED | ECOD (1.6) |
G [auth R] | PF00020 | e3alqR2 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: PF00020 | ECOD (1.6) |
H [auth S] | F_UNCLASSIFIED | e3alqS1 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: F_UNCLASSIFIED | ECOD (1.6) |
H [auth S] | PF00020 | e3alqS2 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: PF00020 | ECOD (1.6) |
I [auth T] | F_UNCLASSIFIED | e3alqT2 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: F_UNCLASSIFIED | ECOD (1.6) |
I [auth T] | PF00020 | e3alqT1 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: PF00020 | ECOD (1.6) |
J [auth U] | F_UNCLASSIFIED | e3alqU3 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: F_UNCLASSIFIED | ECOD (1.6) |
J [auth U] | PF00020 | e3alqU1 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: PF00020 | ECOD (1.6) |
K [auth V] | F_UNCLASSIFIED | e3alqV3 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: F_UNCLASSIFIED | ECOD (1.6) |
K [auth V] | PF00020 | e3alqV1 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: PF00020 | ECOD (1.6) |
L [auth W] | F_UNCLASSIFIED | e3alqW1 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: F_UNCLASSIFIED | ECOD (1.6) |
L [auth W] | PF00020 | e3alqW2 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: PF00020 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
TNFA (Tumor necrosis factor Alpha) | TNF | Homo sapiens (human) | TNF*01 | R-LIKE-DOMAIN TNF (Pr77-233) | RPI | TNF | IMGT (202417-0) | |
TNFRSF1B (Tumor necrosis factor receptor superfamily member 1B) | 4TNFR-CYS | Homo sapiens (human) | TNFRSF1B*01 | R-LIKE-DOMAIN TNFR-CYS | RPI | 4TNFR-CYS | IMGT (202417-0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00229 | TNF(Tumour Necrosis Factor) family (TNF) | TNF(Tumour Necrosis Factor) family | - | Domain | |
PF00020 | TNFR/NGFR cysteine-rich region (TNFR_c6) | TNFR/NGFR cysteine-rich region | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR008983 | Tumour necrosis factor-like domain superfamily | Homologous Superfamily | |
IPR006053 | Tumour necrosis factor | Family | |
IPR002959 | Tumour necrosis factor alpha | Family | |
IPR021184 | Tumour necrosis factor, conserved site | Conserved Site | |
IPR006052 | Tumour necrosis factor domain | Domain | |
IPR033996 | Tumor necrosis factor receptor 1B, N-terminal | Domain | |
IPR020411 | Tumour necrosis factor receptor 1B | Family | |
IPR001368 | TNFR/NGFR cysteine-rich region | Domain |