3ALN

Crystal Structure of human non-phosphorylated MKK4 kinase domain complexed with AMP-PNP

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3alna_	Alpha and beta proteins (a+b)	Protein kinase-like (PK-like)	Protein kinase-like (PK-like)	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d3alnb_	Alpha and beta proteins (a+b)	Protein kinase-like (PK-like)	Protein kinase-like (PK-like)	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d3alnc_	Alpha and beta proteins (a+b)	Protein kinase-like (PK-like)	Protein kinase-like (PK-like)	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Protein kinase-like (PK-like)	8069163	3000066	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Protein kinase-like (PK-like)	8069163	3000066	SCOP2B (2022-06-29)
C	SCOP2 Family	Protein kinases catalytic domain-like	8069162	4003661	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Protein kinase-like (PK-like)	8069163	3000066	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Pkinase_Tyr	e3alnA1	A: a+b complex topology	X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)	H: Protein kinase/SAICAR synthase/ATP-grasp	T: Protein kinase	F: Pkinase_Tyr	ECOD (1.6)
B	Pkinase_Tyr	e3alnB1	A: a+b complex topology	X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)	H: Protein kinase/SAICAR synthase/ATP-grasp	T: Protein kinase	F: Pkinase_Tyr	ECOD (1.6)
C	Pkinase_Tyr	e3alnC1	A: a+b complex topology	X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)	H: Protein kinase/SAICAR synthase/ATP-grasp	T: Protein kinase	F: Pkinase_Tyr	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.200.20	Alpha Beta	2-Layer Sandwich	Phosphorylase Kinase	domain 1	CATH (4.3.0)
A	1.10.510.10	Mainly Alpha	Orthogonal Bundle	Transferase(Phosphotransferase)	domain 1	CATH (4.3.0)
B	3.30.200.20	Alpha Beta	2-Layer Sandwich	Phosphorylase Kinase	domain 1	CATH (4.3.0)
B	1.10.510.10	Mainly Alpha	Orthogonal Bundle	Transferase(Phosphotransferase)	domain 1	CATH (4.3.0)
C	1.10.510.10	Mainly Alpha	Orthogonal Bundle	Transferase(Phosphotransferase)	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF00069	Protein kinase domain (Pkinase)	Protein kinase domain	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Dual specificity mitogen-activated protein kinase kinase 4	MAP kinase kinase activity protein serine/threonine/tyrosine kinase activity catalytic activity, acting on a protein JUN kinase kinase activity kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein serine kinase activity protein tyrosine kinase activity binding adenyl ribonucleotide binding MAP kinase kinase activity protein serine/threonine/tyrosine kinase activity catalytic activity, acting on a protein JUN kinase kinase activity kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein serine kinase activity protein tyrosine kinase activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein serine/threonine kinase activity molecular adaptor activity	muscle cell apoptotic process smooth muscle cell apoptotic process cellular process apoptotic process cell death programmed cell death positive regulation of DNA replication positive regulation of biological process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process organic substance metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process muscle cell apoptotic process smooth muscle cell apoptotic process cellular process apoptotic process cell death programmed cell death positive regulation of DNA replication positive regulation of biological process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process organic substance metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of nucleobase-containing compound metabolic process regulation of biological process biological regulation primary metabolic process DNA metabolic process regulation of macromolecule metabolic process nucleic acid metabolic process organic cyclic compound metabolic process DNA replication positive regulation of DNA metabolic process metabolic process macromolecule metabolic process regulation of metabolic process regulation of DNA metabolic process regulation of DNA replication neuron apoptotic process positive regulation of programmed cell death regulation of cellular process regulation of apoptotic process regulation of programmed cell death positive regulation of apoptotic process positive regulation of neuron apoptotic process positive regulation of cellular process regulation of neuron apoptotic process cellular response to stimulus response to stimulus signaling signal transduction cell communication cellular response to stress response to stress cellular metabolic process cellular senescence intracellular signal transduction intracellular signaling cassette MAPK cascade cellular biosynthetic process positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process regulation of nitric-oxide synthase biosynthetic process positive regulation of biosynthetic process organic substance biosynthetic process nitric-oxide synthase biosynthetic process regulation of biosynthetic process regulation of cellular metabolic process macromolecule biosynthetic process regulation of cellular biosynthetic process biosynthetic process regulation of macromolecule biosynthetic process positive regulation of nitric-oxide synthase biosynthetic process positive regulation of cellular biosynthetic process positive regulation of cell communication positive regulation of signal transduction regulation of signal transduction positive regulation of response to stimulus positive regulation of JNK cascade regulation of intracellular signal transduction JNK cascade regulation of signaling positive regulation of MAPK cascade regulation of JNK cascade positive regulation of intracellular signal transduction regulation of MAPK cascade regulation of response to stimulus regulation of cell communication positive regulation of signaling response to mechanical stimulus response to external stimulus response to abiotic stimulus cellular response to mechanical stimulus cellular response to abiotic stimulus cellular response to external stimulus cellular response to environmental stimulus intrinsic apoptotic signaling pathway in response to oxidative stress programmed cell death in response to reactive oxygen species cellular response to oxidative stress cellular response to chemical stress cellular response to reactive oxygen species hydrogen peroxide-mediated programmed cell death intrinsic apoptotic signaling pathway response to oxygen-containing compound intrinsic apoptotic signaling pathway in response to hydrogen peroxide cellular response to oxygen-containing compound response to reactive oxygen species apoptotic signaling pathway response to oxidative stress cellular response to chemical stimulus response to chemical response to wounding immune response-regulating cell surface receptor signaling pathway cell surface receptor signaling pathway immune response Fc receptor signaling pathway immune response-regulating signaling pathway immune system process Fc-epsilon receptor signaling pathway regulation of immune response regulation of immune system process response to organic substance cellular response to sorbitol response to sorbitol cellular response to carbohydrate stimulus response to carbohydrate cellular response to organic substance multicellular organismal process system process cellular developmental process cardiac muscle cell development developmental growth cell development organ growth muscle cell differentiation cell growth striated muscle tissue development muscle structure development multicellular organism development muscle cell development cell differentiation cardiac muscle hypertrophy anatomical structure development cardiac cell development muscle tissue development cardiac muscle tissue growth system development developmental process muscle hypertrophy heart development heart growth developmental cell growth cardiac muscle tissue development physiological muscle hypertrophy growth animal organ development cardiac muscle cell differentiation striated muscle hypertrophy tissue development muscle system process cardiocyte differentiation circulatory system development cell growth involved in cardiac muscle cell development physiological cardiac muscle hypertrophy striated muscle cell differentiation phosphorylation phosphate-containing compound metabolic process phosphorus metabolic process positive regulation of phosphorylation regulation of protein modification process regulation of protein phosphorylation positive regulation of protein metabolic process positive regulation of phosphate metabolic process positive regulation of protein modification process regulation of phosphate metabolic process protein metabolic process positive regulation of protein phosphorylation protein modification process organonitrogen compound metabolic process protein phosphorylation positive regulation of phosphorus metabolic process regulation of protein metabolic process macromolecule modification regulation of phosphorus metabolic process regulation of phosphorylation negative regulation of neuron apoptotic process negative regulation of programmed cell death negative regulation of biological process motor neuron apoptotic process regulation of motor neuron apoptotic process negative regulation of apoptotic process negative regulation of cellular process negative regulation of motor neuron apoptotic process	somatodendritic compartment cell body perikaryon neuronal cell body cellular anatomical entity intracellular anatomical structure cytoplasm cytosol neuron projection cytoplasm neuron projection cytoplasmic region plasma membrane bounded cell projection cytoplasm plasma membrane bounded cell projection dendrite cytoplasm somatodendritic compartment cell body perikaryon neuronal cell body cellular anatomical entity intracellular anatomical structure cytoplasm cytosol neuron projection cytoplasm neuron projection cytoplasmic region plasma membrane bounded cell projection cytoplasm plasma membrane bounded cell projection dendrite cytoplasm cell projection dendrite dendritic tree axon membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR017441	Protein kinase, ATP binding site	Binding Site
A, B, C	IPR000719	Protein kinase domain	Domain
A, B, C	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A, B, C	IPR008271	Serine/threonine-protein kinase, active site	Active Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C	Pharos: P45985	pancreatic neoplasm primitive neuroectodermal tumor astrocytic tumor breast adenocarcinoma exocrine pancreatic carcinoma lung cancer Malignant neoplasm of breast metastatic melanoma ovarian cancer Pick disease squamous cell lung carcinoma atypical teratoid rhabdoid tumor breast carcinoma glioblastoma malignant ependymoma pancreatic neoplasm primitive neuroectodermal tumor astrocytic tumor breast adenocarcinoma exocrine pancreatic carcinoma lung cancer Malignant neoplasm of breast metastatic melanoma ovarian cancer Pick disease squamous cell lung carcinoma atypical teratoid rhabdoid tumor breast carcinoma glioblastoma malignant ependymoma ovarian serous adenocarcinoma pilocytic astrocytoma subependymal giant cell astrocytoma benign neoplasm of pancreas colorectal adenocarcinoma large cell medulloblastoma malignant glioma medulloblastoma oligodendroglioma

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.