2RKZ

Crystal structure of the second and third fibronectin f1 modules in complex with a fragment of staphylococcus aureus fnbpa-1


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyFnI-like domain 8038831 3000979 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyFnI-like domain 8038827 3000979 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyFnI-like domain 8038831 3000979 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyFnI-like domain 8038827 3000979 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyFnI-like domain 8038827 3000979 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyFnI-like domain 8038831 3000979 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyFnI-like domain 8038827 3000979 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyFnI-like domain 8038831 3000979 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyFnI-like domain 8038831 3000979 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyFnI-like domain 8038827 3000979 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyFnI-like domain 8038831 3000979 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Afn1_1e2rkzA2 A: few secondary structure elementsX: Fibronectin type I module-like (From Homology)H: Fibronectin type I module-likeT: Fibronectin type I moduleF: fn1_1ECOD (1.6)
Afn1e2rkzA1 A: few secondary structure elementsX: Fibronectin type I module-like (From Homology)H: Fibronectin type I module-likeT: Fibronectin type I moduleF: fn1ECOD (1.6)
Bfn1_1e2rkzB2 A: few secondary structure elementsX: Fibronectin type I module-like (From Homology)H: Fibronectin type I module-likeT: Fibronectin type I moduleF: fn1_1ECOD (1.6)
Bfn1e2rkzB1 A: few secondary structure elementsX: Fibronectin type I module-like (From Homology)H: Fibronectin type I module-likeT: Fibronectin type I moduleF: fn1ECOD (1.6)
Cfn1_1e2rkzC2 A: few secondary structure elementsX: Fibronectin type I module-like (From Homology)H: Fibronectin type I module-likeT: Fibronectin type I moduleF: fn1_1ECOD (1.6)
Cfn1e2rkzC1 A: few secondary structure elementsX: Fibronectin type I module-like (From Homology)H: Fibronectin type I module-likeT: Fibronectin type I moduleF: fn1ECOD (1.6)
Dfn1_1e2rkzD2 A: few secondary structure elementsX: Fibronectin type I module-like (From Homology)H: Fibronectin type I module-likeT: Fibronectin type I moduleF: fn1_1ECOD (1.6)
Dfn1e2rkzD1 A: few secondary structure elementsX: Fibronectin type I module-like (From Homology)H: Fibronectin type I module-likeT: Fibronectin type I moduleF: fn1ECOD (1.6)
Efn1_1e2rkzE2 A: few secondary structure elementsX: Fibronectin type I module-like (From Homology)H: Fibronectin type I module-likeT: Fibronectin type I moduleF: fn1_1ECOD (1.6)
Efn1e2rkzE1 A: few secondary structure elementsX: Fibronectin type I module-like (From Homology)H: Fibronectin type I module-likeT: Fibronectin type I moduleF: fn1ECOD (1.6)
Ffn1_1e2rkzF2 A: few secondary structure elementsX: Fibronectin type I module-like (From Homology)H: Fibronectin type I module-likeT: Fibronectin type I moduleF: fn1_1ECOD (1.6)
Ffn1e2rkzF1 A: few secondary structure elementsX: Fibronectin type I module-like (From Homology)H: Fibronectin type I module-likeT: Fibronectin type I moduleF: fn1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.10.70.10 Mainly Beta Ribbon Complement Module domain 1CATH (4.3.0)
B2.10.70.10 Mainly Beta Ribbon Complement Module domain 1CATH (4.3.0)
C2.10.70.10 Mainly Beta Ribbon Complement Module domain 1CATH (4.3.0)
D2.10.70.10 Mainly Beta Ribbon Complement Module domain 1CATH (4.3.0)
E2.10.70.10 Mainly Beta Ribbon Complement Module domain 1CATH (4.3.0)
F2.10.70.10 Mainly Beta Ribbon Complement Module domain 1CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF00039Fibronectin type I domain (fn1)Fibronectin type I domain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Fibronectin
peptide from Fibronectin-binding protein A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR000562Fibronectin type II domainDomain
A, B, C, D, E
IPR000083Fibronectin, type IDomain
A, B, C, D, E
IPR013783Immunoglobulin-like foldHomologous Superfamily
A, B, C, D, E
IPR036943Fibronectin type II domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR013806Kringle-like foldHomologous Superfamily
A, B, C, D, E
IPR003961Fibronectin type IIIDomain
A, B, C, D, E
IPR050991Extracellular Matrix Regulatory ProteinsFamily
A, B, C, D, E
IPR036116Fibronectin type III superfamilyHomologous Superfamily
IPR052506Bacterial Fibronectin-BindingFamily
IPR004237Fibronectin binding repeatRepeat
IPR011252Fibrogen-binding domain 1Homologous Superfamily
IPR011266Fibrinogen-binding domain 2Domain
IPR005877YSIRK Gram-positive signal peptideDomain
IPR008966Adhesion domain superfamilyHomologous Superfamily
IPR019931LPXTG cell wall anchor domainDomain
IPR041171SDR-like Ig domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, B, C, D, E
PharosP02751

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
ACE RESIDAA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

PSI-MOD :  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359
NH2 RESIDAA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 , AA0081 , AA0083 , AA0084 , AA0086 , AA0087 , AA0088 , AA0090 , AA0091 , AA0092 , AA0093 , AA0095 , AA0096 , AA0097 , AA0098 , AA0099 , AA0100

PSI-MOD :  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359 , L-alanine amide MOD:00090 , L-asparagine amide MOD:00092 , L-aspartic acid 1-amide MOD:00093 , L-glutamine amide MOD:00095 , L-glutamic acid 1-amide MOD:00096 , glycine amide MOD:00097 , L-isoleucine amide MOD:00099 , L-leucine amide MOD:00100 , L-lysine amide MOD:00101 , L-methionine amide MOD:00102 , L-proline amide MOD:00104 , L-serine amide MOD:00105 , L-threonine amide MOD:00106 , L-tryptophan amide MOD:00107 , L-tyrosine amide MOD:00108 , L-valine amide MOD:00109