2FZ2
Structure of Turnip Yellow Mosaic Virus at 100 K
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth A] | d2fz2a_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Tymoviridae-like VP | automated matches | (Turnip yellow mosaic virus (Australian isolate) ) [TaxId: 12155 ], | SCOPe (2.08) |
C [auth B] | d2fz2b_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Tymoviridae-like VP | automated matches | (Turnip yellow mosaic virus (Australian isolate) ) [TaxId: 12155 ], | SCOPe (2.08) |
D [auth C] | d2fz2c_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Tymoviridae-like VP | automated matches | (Turnip yellow mosaic virus (Australian isolate) ) [TaxId: 12155 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth A] | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8067992 | 3000918 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8067992 | 3000918 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8067992 | 3000918 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth A] | Tymo_coat | e2fz2A1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Tymo_coat | ECOD (1.6) |
C [auth B] | Tymo_coat | e2fz2B1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Tymo_coat | ECOD (1.6) |
D [auth C] | Tymo_coat | e2fz2C1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Tymo_coat | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth A] | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
C [auth B] | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
D [auth C] | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth A], C [auth B], D [auth C] | PF00983 | Tymovirus coat protein (Tymo_coat) | Tymovirus coat protein | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth D] | 5'-R(*CP*CP*C)-3' | - | - | - |
B [auth A], C [auth B], D [auth C] | Coat protein | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
B [auth A], C [auth B], D [auth C] | IPR000574 | Tymovirus coat protein | Domain |
B [auth A], C [auth B], D [auth C] | IPR029053 | Viral coat protein subunit | Homologous Superfamily |