2DTM

Thermodynamic and structural analyses of hydrolytic mechanism by catalytic antibodies

Domain Annotation: SCOP Classification SCOP Database (version: 2.0) Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species
A	d2dtml1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	(Mus musculus ) [TaxId: 10090 ]
A	d2dtml2	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	C1 set domains (antibody constant domain-like)	automated matches	(Mus musculus ) [TaxId: 10090 ]
B	d2dtmh1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	C1 set domains (antibody constant domain-like)	Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma	(Mus musculus ) [TaxId: 10090 ]

Domain Annotation: CATH CATH Database (version 4.2.0) Homepage

Chain	Domain	Class	Architecture	Topology	Homology
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins
B	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins
B	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Identifier	Description	Comments	Source
A	PF07686	Immunoglobulin V-set domain (V-set)	Immunoglobulin V-set domain	This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.	Domain
A	PF07654	Immunoglobulin C1-set domain (C1-set)	Immunoglobulin C1-set domain	-	Domain
B	PF07686	Immunoglobulin V-set domain (V-set)	Immunoglobulin V-set domain	This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.	Domain

Gene Product Annotation Gene Product Annotation

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
L	IMMUNOGLOBULIN 6D9	binding ion binding cation binding metal ion binding
H	IMMUNOGLOBULIN 6D9	antigen binding binding signaling receptor binding protein binding immunoglobulin receptor binding		plasma membrane external side of plasma membrane cell surface membrane cell periphery side of membrane cellular anatomical entity extracellular region extracellular space immunoglobulin complex protein-containing complex immunoglobulin complex, circulating

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.