2AD9
Solution structure of Polypyrimidine Tract Binding protein RBD1 complexed with CUCUCU RNA
Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth A] | d2ad9a1 | Alpha and beta proteins (a+b) | Ferredoxin-like | RNA-binding domain, RBD, aka RNA recognition motif (RRM) | Canonical RBD | Polypyrimidine tract-binding protein | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth A] | RRM_1_6 | e2ad9A1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_6 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth A] | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth A] | PF13893 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_5) | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The mo ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
B [auth A] | IPR035000 | PTBP1, RNA recognition motif 1 | Domain |
B [auth A] | IPR021790 | PTBP1-like, RNA recognition motif 2 | Domain |
B [auth A] | IPR006536 | HnRNP-L/PTB | Family |
B [auth A] | IPR000504 | RNA recognition motif domain | Domain |
B [auth A] | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily | Homologous Superfamily |
B [auth A] | IPR035979 | RNA-binding domain superfamily | Homologous Superfamily |
B [auth A] | IPR035001 | PTBP1, RNA recognition motif 3 | Domain |