1N1J
Crystal structure of the NF-YB/NF-YC histone pair
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1n1ja_ | All alpha proteins | Histone-fold | Histone-fold | TBP-associated factors, TAFs | Nuclear transcription factor Y subunit beta (Nf-Yb3) | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d1n1jb_ | All alpha proteins | Histone-fold | Histone-fold | TBP-associated factors, TAFs | Nuclear transcription factor Y subunit gamma (Nf-Yc2) | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | TBP-associated factors, TAFs | 8031601 | 4000797 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Core histone-like | 8043979 | 3001387 | SCOP2 (2022-06-29) |
B | SCOP2 Family | TBP-associated factors, TAFs | 8031602 | 4000797 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Core histone-like | 8043980 | 3001387 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | CBFD_NFYB_HMF | e1n1jA1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: CBFD_NFYB_HMF | ECOD (1.6) |
B | CBFD_NFYB_HMF | e1n1jB1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: CBFD_NFYB_HMF | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
B | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00808 | Histone-like transcription factor (CBF/NF-Y) and archaeal histone (CBFD_NFYB_HMF) | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | This family includes archaebacterial histones and histone like transcription factors from eukaryotes. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR009072 | Histone-fold | Homologous Superfamily | |
IPR027113 | Transcription factor NFYB/HAP3 | Family | |
IPR003956 | Transcription factor, NFYB/HAP3, conserved site | Conserved Site | |
IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain | Domain | |
IPR009072 | Histone-fold | Homologous Superfamily | |
IPR007125 | Histone H2A/H2B/H3 | Domain | |
IPR050568 | Transcription and DNA Replication Regulators | Family |