1KXT
Camelid VHH Domains in Complex with Porcine Pancreatic alpha-Amylase
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E | SCOP2B Superfamily | (Trans)glycosidases | 8033369 | 3000313 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8033366 | 3001528 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | (Trans)glycosidases | 8033369 | 3000313 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8033366 | 3001528 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8033366 | 3001528 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | (Trans)glycosidases | 8033369 | 3000313 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E | Alpha-amylase_C | e1kxtE1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: Alpha-amylase_C | ECOD (1.6) |
E | Alpha-amylase | e1kxtE2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Alpha-amylase | ECOD (1.6) |
A | Alpha-amylase_C | e1kxtA1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: Alpha-amylase_C | ECOD (1.6) |
A | Alpha-amylase | e1kxtA2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Alpha-amylase | ECOD (1.6) |
C | Alpha-amylase_C | e1kxtC1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: Alpha-amylase_C | ECOD (1.6) |
C | Alpha-amylase | e1kxtC2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Alpha-amylase | ECOD (1.6) |
B | V-set_8 | e1kxtB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
D | V-set_8 | e1kxtD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
F | V-set_8 | e1kxtF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
E | 3.20.20.80 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases | CATH (4.3.0) |
E | 2.60.40.1180 | Mainly Beta | Sandwich | Immunoglobulin-like | Golgi alpha-mannosidase II | CATH (4.3.0) |
A | 3.20.20.80 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases | CATH (4.3.0) |
A | 2.60.40.1180 | Mainly Beta | Sandwich | Immunoglobulin-like | Golgi alpha-mannosidase II | CATH (4.3.0) |
C | 3.20.20.80 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases | CATH (4.3.0) |
C | 2.60.40.1180 | Mainly Beta | Sandwich | Immunoglobulin-like | Golgi alpha-mannosidase II | CATH (4.3.0) |
B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
D | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
F | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
Immunoglobulin Vhh Fragment | VH | Camelus dromedarius (Arabian camel) | IGHV3S72*01, IGHJ4*01 | V-DOMAIN VH | IG | (VH) | IMGT (202436-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Heavy Chain | IGHV1 | - | alpha-amylase, pancreatic | SAbDab (2024-09-13) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00128 | Alpha amylase, catalytic domain (Alpha-amylase) | Alpha amylase, catalytic domain | Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, a ... | Domain | |
PF02806 | Alpha amylase, C-terminal all-beta domain (Alpha-amylase_C) | Alpha amylase, C-terminal all-beta domain | Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, a ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
ALPHA-AMYLASE, PANCREATIC | ||||
IMMUNOGLOBULIN VHH FRAGMENT | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006047 | Glycosyl hydrolase, family 13, catalytic domain | Domain | |
IPR006048 | Alpha-amylase/branching enzyme, C-terminal all beta | Domain | |
IPR031319 | Alpha-amylase, C-terminal domain | Domain | |
IPR017853 | Glycoside hydrolase superfamily | Homologous Superfamily | |
IPR006046 | Alpha amylase | Family | |
IPR013780 | Glycosyl hydrolase, all-beta | Homologous Superfamily |