1IO4
CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN-CBFBETA CORE DOMAIN HETERODIMER AND C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth B] | d1io4b_ | Coiled coil proteins | Parallel coiled-coil | Leucine zipper domain | Leucine zipper domain | C/ebp beta | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C [auth A] | d1io4a_ | Coiled coil proteins | Parallel coiled-coil | Leucine zipper domain | Leucine zipper domain | C/ebp beta | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
E [auth C] | d1io4c_ | All beta proteins | Common fold of diphtheria toxin/transcription factors/cytochrome f | p53-like transcription factors | RUNT domain | Acute myeloid leukemia 1 protein (AML1), RUNT domain | house mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
F [auth D] | d1io4d_ | All beta proteins | Core binding factor beta, CBF | Core binding factor beta, CBF | Core binding factor beta, CBF | Core binding factor beta, CBF | house mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D [auth B] | SCOP2B Superfamily | Leucine zipper-like | 8044461 | 3001609 | SCOP2B (2022-06-29) |
C [auth A] | SCOP2B Superfamily | Leucine zipper-like | 8044461 | 3001609 | SCOP2B (2022-06-29) |
E [auth C] | SCOP2B Superfamily | p53-like transcription factors | 8042175 | 3000758 | SCOP2B (2022-06-29) |
F [auth D] | SCOP2B Superfamily | Core binding factor beta CBF | 8042549 | 3001169 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E [auth C] | Runt | e1io4C1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Runt | ECOD (1.6) |
F [auth D] | CBF_beta | e1io4D1 | A: beta barrels | X: CBF-like | H: Core binding factor beta, CBF (From Topology) | T: Core binding factor beta, CBF | F: CBF_beta | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
D [auth B] | 1.20.5.170 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
C [auth A] | 1.20.5.170 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
E [auth C] | 2.60.40.720 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
F [auth D] | 2.40.250.10 | Mainly Beta | Beta Barrel | Polyomavirus Enhancer Binding Protein 2 | Chain: A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth A], D [auth B] | PF07716 | Basic region leucine zipper (bZIP_2) | Basic region leucine zipper | - | Coiled-coil |
E [auth C] | PF00853 | Runt domain (Runt) | Runt domain | - | Domain |
F [auth D] | PF02312 | Core binding factor beta subunit (CBF_beta) | Core binding factor beta subunit | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth A], D [auth B] | IPR031106 | CCAAT/enhancer-binding protein C/EBP | Family |
C [auth A], D [auth B] | IPR004827 | Basic-leucine zipper domain | Domain |
C [auth A], D [auth B] | IPR016468 | CCAAT/enhancer-binding protein, chordates | Family |
C [auth A], D [auth B] | IPR046347 | Basic-leucine zipper domain superfamily | Homologous Superfamily |
E [auth C] | IPR012346 | p53/RUNT-type transcription factor, DNA-binding domain superfamily | Homologous Superfamily |
E [auth C] | IPR013524 | Runt domain | Domain |
E [auth C] | IPR016554 | Runt-related transcription factor RUNX | Family |
E [auth C] | IPR008967 | p53-like transcription factor, DNA-binding domain superfamily | Homologous Superfamily |
E [auth C] | IPR000040 | Acute myeloid leukemia 1 protein (AML1)/Runt | Family |
E [auth C] | IPR027384 | Runx, central domain superfamily | Homologous Superfamily |
E [auth C] | IPR013711 | Runx, C-terminal domain | Domain |
F [auth D] | IPR003417 | Core-binding factor, beta subunit | Family |
F [auth D] | IPR036552 | Core-binding factor, beta subunit superfamily | Homologous Superfamily |